Evidence map›Paper›PMID 37489884›Full record

ArticleMicrobial genomics2023

Target capture sequencing for the first Nigerian genotype I ASFV genome.

Adeniyi C Adeola, Pam D Luka, Xiang-Xiang Jiang, Zheng-Fei Cai, Olufunke O Oluwole, Xian Shi, Bukola M Oladele, Temilola O Olorungbounmi, Bamidele Boladuro, Oladipo Omotosho and 10 more

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 3 countries.

Adeniyi C AdeolaState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Pam D LukaNational Veterinary Research Institute, Vom, Nigeria.
Xiang-Xiang JiangState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Zheng-Fei CaiState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Olufunke O OluwoleInstitute of Agricultural Research and Training, Obafemi Awolowo University, Ibadan, Nigeria.
Xian ShiState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Bukola M OladeleInstitute of Agricultural Research and Training, Obafemi Awolowo University, Ibadan, Nigeria.
Temilola O OlorungbounmiInstitute of Agricultural Research and Training, Obafemi Awolowo University, Ibadan, Nigeria.
Bamidele BoladuroInstitute of Agricultural Research and Training, Obafemi Awolowo University, Ibadan, Nigeria.
Oladipo OmotoshoDepartment of Veterinary Medicine, University of Ibadan, Ibadan, Nigeria.
Victor M O OkoroDepartment of Animal Science and Technology, School of Agriculture and Agricultural Technology, Federal University of Technology, Owerri, Nigeria.
Philip M DawudaDepartment of Veterinary Surgery and Theriogenology, College of Veterinary Medicine, University of Agriculture Makurdi, Makurdi, Nigeria.
Sunday C OlaogunDepartment of Veterinary Medicine, University of Ibadan, Ibadan, Nigeria.
Oscar J SankeTaraba State Ministry of Agriculture and Natural Resources, Jalingo, Nigeria.
Hai-Bing XieState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Richard P BishopInternational Livestock Research Institute (ILRI), Nairobi, Kenya.
Jianlin HanInternational Livestock Research Institute (ILRI), Nairobi, Kenya.
Jianbo LiState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Ya-Ping ZhangState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Min-Sheng PengState Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR China.
Kunming Institute of Zoology · CNObafemi Awolowo University · NGUniversity of Ibadan · NGChinese Academy of Agricultural Sciences · CNFederal University of Technology Owerri · NGInternational Livestock Research Institute · KENational Veterinary Research Institute · NGTaraba State University · NGUniversity of Agriculture · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African swine fever (ASF) is a contagious viral disease that affects domestic pigs and wild boars, causing significant economic losses globally. After the first Nigerian outbreak in 1997, there have been frequent reports of ASF in pig-producing regions in the country. To facilitate control, it is important to understand the genotype and phylogenetic relationship of ASF viruses (ASFVs). Recent genetic analysis of Nigerian ASFV isolates has revealed the presence of both genotypes I and II; this is based on analysis of a few selected genes. Phylogenetic analysis of ASFV whole genomes highlights virus origins and evolution in greater depth. However, there is currently no information on the ASFV genome from Nigerian isolates. Two ASFV-positive samples were detected during a random survey of 150 Nigerian indigenous pig samples collected in 2016. We assembled near-complete genomes of the two ASFV-positive samples using in-solution hybrid capture sequencing. The genome-wide phylogenetic tree assigned these two genomes into

Indexed as

African Swine FeverAnimalsDisease OutbreaksGenomicsGenotypePhylogenySus scrofaSwineAfrican swine fever virus (ASFV)genomegenotype INigeriaphylogenytarget capture sequencing

Identifiers

PMID37489884
PMCPMC10438811
OpenAlexW4385230897

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.