Evidence map›Paper›PMID 37489588›Full record

ArticleACS applied materials & interfaces2023

Mechanical Way To Study Molecular Structure of Pericellular Layer.

Nadezda Makarova, Małgorzata Lekka, Kajangi Gnanachandran, Igor Sokolov

Abstract read
In one paragraph

Article in ACS applied materials & interfaces, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nadezda MakarovaDepartment of Mechanical Engineering, Tufts University, Medford, Massachusetts 02155, United States.
Małgorzata LekkaDepartment of Biophysical Microstructures, Institute of Nuclear Physics PAN, PL-31342 Kraków, Poland.ORCID 0000-0003-0844-8662
Kajangi GnanachandranDepartment of Biophysical Microstructures, Institute of Nuclear Physics PAN, PL-31342 Kraków, Poland.
Igor SokolovDepartment of Mechanical Engineering, Tufts University, Medford, Massachusetts 02155, United States.ORCID 0000-0001-6260-4326

Funding

Noninvasive bladder cancer diagnostics via machine learning analysis of nanoscale surface images of epithelial cells extracted from voided urine samplesR01CA262147 · NCI · TUFTS UNIVERSITY MEDFORD · PI DEMIDENKO, EUGENE, SOKOLOV, IGOR · 2021 to 2025
$3.1M
Ultra-bright fluorescent nanoparticles for colorectal adenoma detectionR21DK125911 · NIDDK · DUKE UNIVERSITY · PI ROPER, JATIN, SOKOLOV, IGOR · 2021 to 2022
$461k
NCI NIH HHS R01 CA262147NIDDK NIH HHS R21 DK125911
6 · The paper itself

Abstract

Atomic force microscopy (AFM) has been used to study the mechanical properties of cells, in particular, malignant cells. Softening of various cancer cells compared to their nonmalignant counterparts has been reported for various cell types. However, in most AFM studies, the pericellular layer was ignored. As was shown, it could substantially change the measured cell rigidity and miss important information on the physical properties of the pericellular layer. Here we take into account the pericellular layer by using the brush model to do the AFM indentation study of bladder epithelial bladder nonmalignant (HCV29) and cancerous (TCCSUP) cells. It allows us to measure not only the quasistatic Young's modulus of the cell body but also the physical properties of the pericellular layer (the equilibrium length and grafting density). We found that the inner pericellular brush was longer for cancer cells, but its grafting density was similar to that found for nonmalignant cells. The outer brush was much shorter and less dense for cancer cells. Furthermore, we demonstrate a method to convert the obtained physical properties of the pericellular layer into biochemical language better known to the cell biology community. It is done by using heparinase I and neuraminidase enzymatic treatments that remove specific molecular parts of the pericellular layer. The presented here approach can also be used to decipher the molecular composition of not only pericellular but also other molecular layers.

Indexed as

Molecular StructureElastic ModulusMicroscopy, Atomic Forcebrush modelcell mechanicsenzymatic treatment, atomic force microscopy (AFM)pericellular layerurothelial and bladder cancers

Identifiers

PMID37489588
PMCPMC10401571

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.