Evidence map›Paper›PMID 37488358›Full record

ArticleNature structural & molecular biology2023

Collateral lethality between HDAC1 and HDAC2 exploits cancer-specific NuRD complex vulnerabilities.

Yuxiang Zhang, David Remillard, Ugoma Onubogu, Barbara Karakyriakou, Joshua N Asiaban, Anissa R Ramos, Kirsten Bowland, Timothy R Bishop, Paige A Barta, Stephanie Nance and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

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  12. Lineage-Selective Dependencies in Pediatric Cancers.Cold Spring Harbor perspectives in medicine · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Yuxiang ZhangDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
David RemillardDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Ugoma OnuboguDepartment of Molecular Medicine, The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, Jupiter, FL, USA.
Barbara KarakyriakouMassachusetts General Hospital Cancer Center, Charlestown, MA, USA.ORCID http://orcid.org/0000-0001-7820-2567
Joshua N AsiabanDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Anissa R RamosDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Kirsten BowlandDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-8618-6154
Timothy R BishopDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Paige A BartaDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Stephanie NanceDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Adam D DurbinDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-5472-9847
Christopher J OttMassachusetts General Hospital Cancer Center, Charlestown, MA, USA.ORCID http://orcid.org/0000-0001-6142-7241
Michalina JaniszewskaDepartment of Molecular Medicine, The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, Jupiter, FL, USA.ORCID http://orcid.org/0000-0002-8592-5146
Benjamin F CravattDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Michael A ErbDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA. michaelerb@scripps.edu.ORCID http://orcid.org/0000-0001-9993-3481
Scripps Research Institute · USSt. Jude Children's Research Hospital · USBroad Institute · USMassachusetts General Hospital · US

Funding

Targeting crotonyl-lysine chromatin readers to disrupt pathogenic gene expression in leukemiaDP5OD026380 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI ERB, MICHAEL A · 2018 to 2022
$2.4M
Targeting EP300, a selective dependency in neuroblastomaK08CA245251 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DURBIN, ADAM DAVID · 2020 to 2024
$1.3M
NCI NIH HHS K08 CA245251NIH HHS DP5 OD026380
6 · The paper itself

Abstract

Transcriptional co-regulators have been widely pursued as targets for disrupting oncogenic gene regulatory programs. However, many proteins in this target class are universally essential for cell survival, which limits their therapeutic window. Here we unveil a genetic interaction between histone deacetylase 1 (HDAC1) and HDAC2, wherein each paralog is synthetically lethal with hemizygous deletion of the other. This collateral synthetic lethality is caused by recurrent chromosomal deletions that occur in diverse solid and hematological malignancies, including neuroblastoma and multiple myeloma. Using genetic disruption or dTAG-mediated degradation, we show that targeting HDAC2 suppresses the growth of HDAC1-deficient neuroblastoma in vitro and in vivo. Mechanistically, we find that targeted degradation of HDAC2 in these cells prompts the degradation of several members of the nucleosome remodeling and deacetylase (NuRD) complex, leading to diminished chromatin accessibility at HDAC2-NuRD-bound sites of the genome and impaired control of enhancer-associated transcription. Furthermore, we reveal that several of the degraded NuRD complex subunits are dependencies in neuroblastoma and multiple myeloma, providing motivation to develop paralog-selective HDAC1 or HDAC2 degraders that could leverage HDAC1/2 synthetic lethality to target NuRD vulnerabilities. Altogether, we identify HDAC1/2 collateral synthetic lethality as a potential therapeutic target and reveal an unexplored mechanism for targeting NuRD-associated cancer dependencies.

Indexed as

Multiple MyelomaNeuroblastomaGene Expression RegulationHistone Deacetylase 1Histone Deacetylase 2HumansMi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomesHDAC1 protein, humanHDAC2 protein, humanHistone Deacetylase 1Histone Deacetylase 2Mi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomes

Identifiers

PMID37488358
PMCPMC10529074
OpenAlexW4385197455

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.