Evidence map›Paper›PMID 37488165›Full record

ArticleScientific reports2023

Detection, visualization and quantification of protein complexes in human Alzheimer's disease brains using proximity ligation assay.

Wilber Romero-Fernandez, Cristian Carvajal-Tapia, Alex Prusky, Ketaki A Katdare, Emmeline Wang, Alena Shostak, Lissa Ventura-Antunes, Hannah J Harmsen, Ethan S Lippmann, Kjell Fuxe and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Advancement in human neuroimaging based on proximity ligation assay in brain disease.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Article
  6. Article
  7. Article
  8. IQGAP2 regulates blood-brain barrier immune dynamics.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Wilber Romero-FernandezDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA. wilber.romero.fernandez@vumc.org.
Cristian Carvajal-TapiaDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA.
Alex PruskyDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA.
Ketaki A KatdareVanderbilt Brain Institute, Vanderbilt University, Nashville, TN, 37232, USA.
Emmeline WangDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA.
Alena ShostakDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA.
Lissa Ventura-AntunesDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA.
Hannah J HarmsenDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37240, USA.
Ethan S LippmannDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA.ORCID 0000-0001-5703-5747
Kjell FuxeDepartment of Neuroscience, Karolinska Institute, Solna, 17177, Stockholm, Sweden.ORCID 0000-0001-8491-4288
Jason A MacGurnDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, 37240, USA.
Dasiel O Borroto-EscuelaDepartment of Neuroscience, Karolinska Institute, Solna, 17177, Stockholm, Sweden.
Matthew S SchragDepartment of Neurology, Vanderbilt University Medical Center, MRBIII 465 21St Avenue S, Suite 6158, Nashville, TN, 37240, USA. matthew.schrag@vumc.org.
Vanderbilt University Medical Center · USVanderbilt University · USKarolinska Institutet · SE

Funding

Elucidating Molecular Drivers of Aging and Alzheimer's Disease via Multimodal Imaging Mass SpectrometryR01AG078803 · NIA · VANDERBILT UNIVERSITY · PI Rena A. S. Robinson, Matthew Schrag · 2022 to 2026
$3.5M
Defective lysosomal membrane fission mediates axonal lysosome accumulation in dystrophic neurites in Alzheimer's disease.K76AG060001 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SCHRAG, MATTHEW · 2019 to 2023
$1.2M
Confocal Microscope for Live Embryo Imaging in a Shared Resource FacilityS10RR027396 · NCRR · VANDERBILT UNIVERSITY · PI PRINCE, LAWRENCE S · 2010 to 2010
$460k
NCRR NIH HHS S10 RR027396NIA NIH HHS K76 AG060001NIA NIH HHS R01 AG078803
6 · The paper itself

Abstract

Examination of healthy and diseased human brain is essential to translational neuroscience. Protein-protein interactions play a pivotal role in physiological and pathological processes, but their detection is difficult, especially in aged and fixed human brain tissue. We used the in-situ proximity ligation assay (PLA) to broaden the range of molecular interactions assessable in-situ in the human neuropathology. We adapted fluorescent in-situ PLA to detect ubiquitin-modified proteins in human brains with Alzheimer's disease (AD), including approaches for the management of autofluorescence and quantification using a high-content image analysis system. We confirmed that phosphorylated microtubule-associated protein tau (Serine202, Threonine205) aggregates were modified by ubiquitin and that phospho-tau-ubiquitin complexes were increased in hippocampal and frontal cortex regions in AD compared to non-AD brains. Overall, we refined PLA for use in human neuropathology, which has revealed a profound change in the distribution of ubiquitin in AD brain and its association with characteristic tau pathologies.

Indexed as

Alzheimer DiseaseAgedBrainCerebral CortexHumanstau ProteinsUbiquitinUbiquitinated Proteinstau ProteinsUbiquitinUbiquitinated Proteins

Identifiers

PMID37488165
PMCPMC10366145
OpenAlexW4385197764

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.