Evidence map›Paper›PMID 37487082›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Toxic antiphage defense proteins inhibited by intragenic antitoxin proteins.

Aoshu Zhong, Xiaofang Jiang, Alison B Hickman, Katherine Klier, Gabriella I C Teodoro, Fred Dyda, Michael T Laub, Gisela Storz

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. High-throughput discovery of inhibitory protein fragments with AlphaFold.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Review
  7. Large Roles of Small Proteins.Annual review of microbiology · 2024
    Review
  8. Article
  9. High-throughput discovery of inhibitory protein fragments with AlphaFold.bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. Antitoxins within toxins: A new theme in bacterial antivirus defense.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Aoshu ZhongDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892.
Xiaofang JiangIntramural Research Program, National Library of Medicine, NIH, Bethesda, MD 20894.
Alison B HickmanLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD 20892.
Katherine KlierDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892.
Gabriella I C TeodoroDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
Fred DydaLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD 20892.
Michael T LaubDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0002-8288-7607
Gisela StorzDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892.ORCID 0000-0001-6698-1241
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USMassachusetts Institute of Technology · USNational Institute of Diabetes and Digestive and Kidney Diseases · USUnited States National Library of Medicine · US

Funding

Small Regulatory ProteinsZIAHD008855 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI STORZ, GISELA · 2009 to 2025
$16.3M
Comparative genomic analysis of bacteria speciesZIALM202010 · NLM · NATIONAL LIBRARY OF MEDICINE · PI JIANG, XIAOFANG · 2020 to 2025
$6.9M
Small ORFsZ01HD008855 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI STORZ, GISELA · 2008 to 2008
$516k
Howard Hughes Medical InstituteIntramural NIH HHS Z01 HD008855NICHD NIH HHS HD008855-15
6 · The paper itself

Abstract

Recombination-promoting nuclease (Rpn) proteins are broadly distributed across bacterial phyla, yet their functions remain unclear. Here, we report that these proteins are toxin-antitoxin systems, comprised of genes-within-genes, that combat phage infection. We show the small, highly variable Rpn

Indexed as

AntitoxinsBacteriophagesBlood Group AntigensAmino AcidsDimerizationEndonucleasesEscherichia coliAmino AcidsAntitoxinsBlood Group AntigensEndonucleasesiTISRpnsmall proteintoxin-antitoxin

Identifiers

PMID37487082
PMCPMC10400941
OpenAlexW4385191665

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.