Evidence map›Paper›PMID 37485510›Full record

ArticleFrontiers in microbiology2023

A protease activity-based machine-learning approach as a complementary tool for conventional diagnosis of diarrhea-predominant irritable bowel syndrome.

Kazuki Tanaka, Naoki Tanigawa, Isaiah Song, Toru Komatsu, Yugo Kuriki, Yukari Tanaka, Shin Fukudo, Yasuteru Urano, Shinji Fukuda

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kazuki TanakaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.
Naoki TanigawaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.
Isaiah SongInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.
Toru KomatsuGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, Tokyo, Japan.
Yugo KurikiGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, Tokyo, Japan.
Yukari TanakaDepartment of Gastroenterology, Sendai Kousei Hospital, Sendai, Miyagi, Japan.
Shin FukudoDepartment of Behavioral Medicine, Tohoku University Graduate School of Medicine, Sendai, Japan.
Yasuteru UranoGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, Tokyo, Japan.
Shinji FukudaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Irritable bowel syndrome (IBS) has no clinically accepted biomarkers even though it affects a large number of individuals worldwide. To address this lack of understanding, we evaluated peptidase activity in fecal samples from 35 patients with diarrheal IBS without symptom exacerbation (IBS-n) and 35 healthy subjects using a library of 384 fluorescent enzymatic substrate probes. IBS-n patients had high trypsin-like peptidase activity for cleavage of C-terminal lysine and arginine residues and low elastase-like activity for cleavage of C-terminal serine and glycine residues. These fluorescent probe library data, together with diagnostic machine-learning techniques, were able to accurately predict IBS-n. This approach can be used to diagnose diseases where no clinically accepted biomarkers exist, in which fecal enzyme activity is altered and also suggests that the development of new therapies targeting enzyme activities is possible.

Indexed as

fluorescent probeirritable bowel syndromemachine-learningpredictiontrypsin

Identifiers

PMID37485510
PMCPMC10361618

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.