Evidence map›Paper›PMID 37485300›Full record

ArticleThe annals of applied statistics2023

MODELING CELL POPULATIONS MEASURED BY FLOW CYTOMETRY WITH COVARIATES USING SPARSE MIXTURE OF REGRESSIONS.

By Sangwon Hyun, Mattias Rolf Cape, Francois Ribalet, Jacob Bien

Open access · greenAbstract read
In one paragraph

Article in The annals of applied statistics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Covariate Adjusted Functional Mixed Membership Models.Statistics and data science in imaging · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

By Sangwon HyunDepartment of Data Sciences and Operations, University of Southern California.
Mattias Rolf CapeSchool of Oceanography, University of Washington.
Francois RibaletSchool of Oceanography, University of Washington.
Jacob BienDepartment of Data Sciences and Operations, University of Southern California.
University of Southern California · USUniversity of Washington · US

Funding

A Modeling Framework for Multi-View Data, with Applications to the Pioneer 100 Study and Protein Interaction NetworksR01GM123993 · NIGMS · UNIVERSITY OF WASHINGTON · PI BIEN, JACOB, WITTEN, DANIELA · 2017 to 2020
$1.3M
NIGMS NIH HHS R01 GM123993
6 · The paper itself

Abstract

The ocean is filled with microscopic microalgae, called phytoplankton, which together are responsible for as much photosynthesis as all plants on land combined. Our ability to predict their response to the warming ocean relies on understanding how the dynamics of phytoplankton populations is influenced by changes in environmental conditions. One powerful technique to study the dynamics of phytoplankton is flow cytometry which measures the optical properties of thousands of individual cells per second. Today, oceanographers are able to collect flow cytometry data in real time onboard a moving ship, providing them with fine-scale resolution of the distribution of phytoplankton across thousands of kilometers. One of the current challenges is to understand how these small- and large-scale variations relate to environmental conditions, such as nutrient availability, temperature, light and ocean currents. In this paper we propose a novel sparse mixture of multivariate regressions model to estimate the time-varying phytoplankton subpopulations while simultaneously identifying the specific environmental covariates that are predictive of the observed changes to these subpopulations. We demonstrate the usefulness and interpretability of the approach using both synthetic data and real observations collected on an oceanographic cruise conducted in the northeast Pacific in the spring of 2017.

Indexed as

alternating direction method of multipliersclusteringexpectation-maximizationflow cytometrygatingmicrobiomeMixture of regressionsoceanphytoplanktonsparse regression

Identifiers

PMID37485300
PMCPMC10360992
OpenAlexW3080399622

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.