Evidence map›Paper›PMID 37484218›Full record

ArticleHeliyon2023

The rs9402373 polymorphism of CTGF gene may not be related to inflammatory bowel disease susceptibility in Chinese population based on ARMS-PCR genotyping.

Yiyi Xie, Ying Ping, Pan Yu, Weiwei Liu, Xinan Chen, Qi Wang, Yuhua Chen, Xiuzhi Duan, Xuchu Wang

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Article in Heliyon, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

9 authors.

Yiyi XieThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Ying PingThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Pan YuThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Weiwei LiuThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Xinan ChenHangzhou Medical College, China.
Qi WangThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Yuhua ChenThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Xiuzhi DuanThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.
Xuchu WangThe Second Affiliated Hospital of Zhejiang University School of Medicine, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: It has been confirmed that the connective tissue growth factor (CTGF) gene rs9402373 polymorphism is associated with fibrotic and inflammatory diseases. However, studies on the relationship between polymorphisms in CTGF rs9402373 and inflammatory bowel disease (IBD) remain rare. Therefore, the aim of this study was to assess the association between the CTGF rs9402373 polymorphism and IBD susceptibility in a Chinese population. Materials and methods: To establish an amplification refractory mutation system (ARMS) PCR technology for genotyping CTGF gene rs9402373 polymorphism, we designed two specific forward primers for the wild and mutant types by placing the allele-specific nucleotide at the penultimate position of the '3' end of the primer. Then, 10 samples were randomly selected and rechecked by DNA sequencing to verify the accuracy of this method. We further used the established method to detect specimens collected from 191 patients with inflammatory bowel disease, including 120 Crohn's disease (CD) and 71 ulcerative colitis (UC), and 110 healthy Han Chinese individuals. Results: We successfully established the ARMS-PCR method for genotyping, and the results of 10 randomly selected samples were completely consistent with DNA sequencing. The rs9402373 G allele frequencies in UC and CD cases were 38.03% and 43.75%, respectively, and in controls, they were 41.82%. No significant difference was found in minor allele frequencies between the UC or CD and control groups (P = 0.473, P = 0.676). Genotype analysis demonstrated that there was no relationship between CTGF rs9402373 polymorphism and the risk of IBD regardless of the inheritance mode (P > 0.05). Conclusions: In this preliminary study, we successfully developed a simple, efficient and cost-effective method for genotyping CTGF rs9402373 polymorphism. The polymorphism may not be related to IBD susceptibility in the Chinese Han population.

Indexed as

Amplification refractory mutation systemConnective tissue growth factorInflammatory bowel diseaseSingle nucleotide polymorphism

Identifiers

PMID37484218
PMCPMC10361113

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