Evidence map›Paper›PMID 37483962›Full record

ArticlePeerJ2023

Identification of PIMREG as a novel prognostic signature in breast cancer via integrated bioinformatics analysis and experimental validation.

Wenjing Zhao, Yuanjin Chang, Zhaoye Wu, Xiaofan Jiang, Yong Li, Ruijin Xie, Deyuan Fu, Chenyu Sun, Ju Gao

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Wenjing Zhao *Clinical Medical College, Yangzhou University, Yangzhou, Jiangsu, China.
Yuanjin Chang *School of Medicine, Jiangnan College, WuXi, JiangSu, China.
Zhaoye WuSchool of Medicine, Jiangnan College, WuXi, JiangSu, China.
Xiaofan JiangSchool of Medicine, Jiangnan College, WuXi, JiangSu, China.
Yong LiClinical Medical College, Yangzhou University, Yangzhou, Jiangsu, China.
Ruijin XieSchool of Medicine, Jiangnan College, WuXi, JiangSu, China.
Deyuan FuClinical Medical College, Yangzhou University, Yangzhou, Jiangsu, China.
Chenyu SunDepartment of General Surgery, The second Affiliated Hospital of Anhui Medical University, Anhui, China.
Ju GaoClinical Medical College, Yangzhou University, Yangzhou, Jiangsu, China.
Yangzhou University · CNAnhui Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Phosphatidylinositol binding clathrin assembly protein interacting mitotic regulator (PIMREG) expression is upregulated in a variety of cancers. However, its potential role in breast cancer (BC) remains uncertain. Methods: The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases were used to gather relevant information. The expression of PIMREG and its clinical implication in BC were assessed by using Wilcoxon rank-sum test. The prognostic value of PIMREG in BC was evaluated through the Cox regression model and nomogram, and visualized by Kaplan-Meier survival curves. Genes/proteins that interact with PIMREG in BC were also identified through GeneMANIA and MaxLink. Gene set enrichment analysis (GSEA) was then performed. The correlations of the immune cell infiltration and immune checkpoints with the expression of PIMREG in BC were explored via TIMER, TISIDB, and GEPIA. Potential drugs that interact with PIMREG in BC were explored via Q-omic. The siRNA transfection, CCK-8, and transwell migration assay were conducted to explore the function of PIMREG in cell proliferation and migration. Results: PIMREG expression was significantly higher in infiltrating ductal carcinoma, estrogen receptor negative BC, and progestin receptor negative BC. High expression of PIMREG was associated with poor overall survival, disease-specific survival, and progression-free interval. A nomogram based on PIMREG was developed with a satisfactory prognostic value. PIMREG also had a high diagnostic ability, with an area under the curve of 0.940. Its correlations with several immunomodulators were also observed. Immune checkpoint CTLA-4 was significantly positively associated with PIMREG. HDAC2 was found as a potentially critical link between PIMREG and BRCA1/2. In addition, PIMREG knockdown could inhibit cell proliferation and migration in BC. Conclusions: The high expression of PIMREG is associated with poor prognosis and immune checkpoints in BC. HDAC2 may be a critical link between PIMREG and BRCA1/2, potentially a therapeutic target.

Indexed as

Breast NeoplasmsComputational BiologyIntracellular Signaling Peptides and ProteinsAdultBRCA1 ProteinBRCA2 ProteinCell Line, TumorFemaleGene Expression Regulation, NeoplasticGene Knockdown TechniquesHumansMiddle AgedNuclear ProteinsPrognosisReproducibility of ResultsSignal TransductionBRCA1 ProteinBRCA2 ProteinIntracellular Signaling Peptides and ProteinsNuclear ProteinsPIMREG protein, humanBioinformatics analysisBreast cancerImmune infiltratePIMREGPrognosis

Identifiers

PMID37483962
PMCPMC10358341
OpenAlexW4384525152

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.