Evidence map›Paper›PMID 37483242›Full record

ArticleACS omega2023

Clusterome: A Comprehensive Data Set of Atmospheric Molecular Clusters for Machine Learning Applications.

Yosef Knattrup, Jakub Kubečka, Daniel Ayoubi, Jonas Elm

Open access · goldAbstract read
In one paragraph

Article in ACS omega, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yosef KnattrupDepartment of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark.ORCID https://orcid.org/0000-0003-3549-7494
Jakub KubečkaDepartment of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark.
Daniel AyoubiDepartment of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark.ORCID https://orcid.org/0000-0003-1972-6285
Jonas ElmDepartment of Chemistry, iClimate, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark.ORCID https://orcid.org/0000-0003-3736-4329
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Formation and growth of atmospheric molecular clusters into aerosol particles impact the global climate and contribute to the high uncertainty in modern climate models. Cluster formation is usually studied using quantum chemical methods, which quickly becomes computationally expensive when system sizes grow. In this work, we present a large database of ∼250k atmospheric relevant cluster structures, which can be applied for developing machine learning (ML) models. The database is used to train the ML model kernel ridge regression (KRR) with the FCHL19 representation. We test the ability of the model to extrapolate from smaller clusters to larger clusters, between different molecules, between equilibrium structures and out-of-equilibrium structures, and the transferability onto systems with new interactions. We show that KRR models can extrapolate to larger sizes and transfer acid and base interactions with mean absolute errors below 1 kcal/mol. We suggest introducing an iterative ML step in configurational sampling processes, which can reduce the computational expense. Such an approach would allow us to study significantly more cluster systems at higher accuracy than previously possible and thereby allow us to cover a much larger part of relevant atmospheric compounds.

Identifiers

PMID37483242
PMCPMC10357536
OpenAlexW4382653722

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.