Evidence map›Paper›PMID 37481717›Full record

ArticleCell reports2023

Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in a panel of inbred and recombinant inbred mice.

Arshad H Khan, Jared R Bagley, Nathan LaPierre, Carlos Gonzalez-Figueroa, Tadeo C Spencer, Mudra Choudhury, Xinshu Xiao, Eleazar Eskin, James D Jentsch, Desmond J Smith

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Arshad H KhanDepartment of Molecular and Medical Pharmacology, Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA.
Jared R BagleyDepartment of Psychology, Binghamton University, Binghamton, NY, USA.
Nathan LaPierreDepartment of Computer Science, UCLA, Los Angeles, CA 90095, USA.
Carlos Gonzalez-FigueroaDepartment of Integrative Biology and Physiology, UCLA, Los Angeles, CA 90095, USA.
Tadeo C SpencerDepartment of Integrative Biology and Physiology, UCLA, Los Angeles, CA 90095, USA.
Mudra ChoudhuryDepartment of Integrative Biology and Physiology, UCLA, Los Angeles, CA 90095, USA.
Xinshu XiaoDepartment of Integrative Biology and Physiology, UCLA, Los Angeles, CA 90095, USA.
Eleazar EskinDepartment of Computational Medicine, UCLA, Los Angeles, CA 90095, USA.
James D JentschDepartment of Psychology, Binghamton University, Binghamton, NY, USA.
Desmond J SmithDepartment of Molecular and Medical Pharmacology, Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA. Electronic address: dsmith@mednet.ucla.edu.
University of California, Los Angeles · USBinghamton University · US

Funding

Project 5: Circadian RhythmsP50DA039841 · NIDA · JACKSON LABORATORY · PI J. DAVID JENTSCH · 2016 to 2026
$26.2M
RESEARCH TRAINING IN RESPIRATORY BIOLOGYT32HL007605 · NHLBI · UNIVERSITY OF CHICAGO · PI Yun Fang, Gokhan M. Mutlu · 1985 to 2026
$18.1M
Genetic pathways for impulsivity and drug reinforcement: DNA and transcriptome variation in miceU01DA041602 · NIDA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ESKIN, ELEAZAR, JENTSCH, J. DAVID · 2017 to 2021
$3.2M
Systematic approaches to deciphering regulation and function of RNA editing in brainR01MH123177 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2021 to 2025
$3.1M
Development and Neuroadaptations in Alcohol and Addictions (DNA2)T32AA025606 · NIAAA · STATE UNIVERSITY OF NY,BINGHAMTON · PI J. DAVID JENTSCH · 2017 to 2026
$2.7M
Intersecting genetic risk for extreme cocaine self-administration with dopamine neurotransmissionK99DA055091 · NIDA · STATE UNIVERSITY OF NY,BINGHAMTON · PI BAGLEY, JARED R · 2023 to 2023
$140k
NIAAA NIH HHS T32 AA025606NIDA NIH HHS K99 DA055091NIDA NIH HHS P50 DA039841NIDA NIH HHS U01 DA041602NIMH NIH HHS R01 MH123177
6 · The paper itself

Abstract

To identify addiction genes, we evaluate intravenous self-administration of cocaine or saline in 84 inbred and recombinant inbred mouse strains over 10 days. We integrate the behavior data with brain RNA-seq data from 41 strains. The self-administration of cocaine and that of saline are genetically distinct. We maximize power to map loci for cocaine intake by using a linear mixed model to account for this longitudinal phenotype while correcting for population structure. A total of 15 unique significant loci are identified in the genome-wide association study. A transcriptome-wide association study highlights the Trpv2 ion channel as a key locus for cocaine self-administration as well as identifying 17 additional genes, including Arhgef26, Slc18b1, and Slco5a1. We find numerous instances where alternate splice site selection or RNA editing altered transcript abundance. Our work emphasizes the importance of Trpv2, an ionotropic cannabinoid receptor, for the response to cocaine.

Indexed as

CocaineCocaine-Related DisordersAdministration, IntravenousAnimalsBrainGenome-Wide Association StudyMiceMice, Inbred C57BLCocaineaddictioncannabinoidcocainecomplex traitCP: GenomicsCP: NeuroscienceGWASmiceTrpv2TWAS

Identifiers

PMID37481717
PMCPMC10530068
OpenAlexW4385142458

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.