Evidence map›Paper›PMID 37478350›Full record

ArticleBioinformatics (Oxford, England)2023

AtlasXplore: a web platform for visualizing and sharing spatial epigenome data.

Joshua Barnett, Noori Sotudeh, Poorvi Rao, Jonah Silverman, Tamara Jafar, Liya Wang

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joshua BarnettBioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.
Noori SotudehBioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.
Poorvi RaoBioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.
Jonah SilvermanBioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.
Tamara JafarBioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.ORCID 0000-0002-4763-3409
Liya WangBioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.ORCID 0000-0001-6810-1332

Funding

Microfluidics Platform for Spatial Multi-Omics Analysis of Tissue at Single Cell ResolutionR43HG012526 · NHGRI · ATLASXOMICS INC. · PI GENNARO, JOSEPH CHARLES, WANG, LIYA · 2022 to 2022
$222k
NHGRI NIH HHS R43 HG012526
6 · The paper itself

Abstract

motivationIn recent years, a growing number of spatial epigenome datasets have been generated, presenting rich opportunities for studying the regulation mechanisms in solid tissue sections. However, visual exploration of these datasets requires extensive computational processing of raw data, presenting a challenge for researchers without advanced computational skills to fully explore and analyze such datasets.

resultsHere, we introduce AtlasXplore, a web-based platform that enables scientists to interactively navigate a growing collection of spatial epigenome data using an expanding set of tools. AVAILABILITY AND IMPLEMENTATION: https://web.atlasxomics.com.

Indexed as

EpigenomeSoftware

Identifiers

PMID37478350
PMCPMC10394123

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.