Evidence map›Paper›PMID 37478179›Full record

ArticleScience advances2023

Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants.

Min Li, Dario Oliveira Passos, Zelin Shan, Steven J Smith, Qinfang Sun, Avik Biswas, Indrani Choudhuri, Timothy S Strutzenberg, Allan Haldane, Nanjie Deng and 9 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  10. Two cases of possible transmitted HIV drug resistance to all currently available integrase inhibitors, the Netherlands, 2025.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Min LiNational Institute of Diabetes and Digestive Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-7119-2148
Dario Oliveira PassosThe Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID 0000-0003-1333-9102
Zelin ShanThe Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID 0000-0003-4983-3575
Steven J SmithCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.ORCID 0000-0001-9207-1671
Qinfang SunCenter for Biophysics and Computational Biology, and Department of Chemistry, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0001-7362-1543
Avik BiswasThe Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID 0000-0002-3519-3944
Indrani ChoudhuriCenter for Biophysics and Computational Biology, and Department of Chemistry, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0002-5829-4625
Timothy S StrutzenbergThe Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID 0000-0003-0598-534X
Allan HaldaneCenter for Biophysics and Computational Biology and Department of Physics, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0002-8343-1994
Nanjie DengDepartment of Chemistry and Physical Sciences, Pace University, New York, NY, 10038, USA.ORCID 0000-0001-8805-3526
Zhaoyang LiNational Institute of Diabetes and Digestive Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Xue Zhi ZhaoCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.ORCID 0000-0003-1006-6364
Lorenzo BrigantiDivision of Infectious Diseases, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.ORCID 0000-0003-2237-6896
Mamuka KvaratskheliaDivision of Infectious Diseases, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.ORCID 0000-0003-3800-0033
Terrence R BurkeCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.ORCID 0000-0001-9925-8586
Ronald M LevyCenter for Biophysics and Computational Biology and Department of Physics, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0001-8696-5177
Stephen H HughesCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.ORCID 0000-0002-9176-4377
Robert CraigieNational Institute of Diabetes and Digestive Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0001-9516-6385
Dmitry LyumkisThe Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID 0000-0002-8124-7472
National Institutes of Health · USSalk Institute for Biological Studies · USTemple University · USNational Institute of Diabetes and Digestive and Kidney Diseases · USUniversity of Colorado Anschutz Medical Campus · USPace University · USScripps Research Institute · US

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
Structural Biology CoreU54AI170855 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Bruce Edward Torbett · 2022 to 2026
$36.7M
Studies of nucleoprotein complexes involved in retroviral DNA integrationZIADK036169 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI CRAIGIE, ROBERT · 2009 to 2025
$22.5M
Design and Synthesis of HIV Integrase as Potential Anti-AIDS DrugsZIABC007363 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BURKE, TERRENCE · 2009 to 2025
$11.7M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Structural basis for activity of and resistance to HIV integrase inhibitorsR01AI136680 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LYUMKIS, DMITRY · 2017 to 2021
$3.5M
Structural basis for activity of and resistance to HIV integrase inhibitorsU01AI136680 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LYUMKIS, DMITRY · 2022 to 2025
$3.4M
Mapping Fitness & Free Energy Landscapes of ProteinsR35GM132090 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI Ronald Levy · 2019 to 2026
$3.2M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
Novel mechanism of integrase (IN) resistance to Dolutegravir through epistatic interactions between IN and the nucleocapsid and polypurine tract regions of HIV-1R01AI146017 · NIAID · EMORY UNIVERSITY · PI HACHIYA, ATSUKO, LYUMKIS, DMITRY · 2019 to 2023
$2.6M
High-speed direct detector for cryo electron microscopyS10OD032467 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2022 to 2022
$600k
Interrogating the Structural Basis of Nuclear Receptor Activation on ChromatinF32GM148049 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI STRUTZENBERG, TIMOTHY SILAS · 2022 to 2024
$213k
NIAID NIH HHS R01 AI136680NIAID NIH HHS R01 AI146017NIAID NIH HHS U01 AI136680NIAID NIH HHS U54 AI170855NIGMS NIH HHS F32 GM148049NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R35 GM132090NIGMS NIH HHS U24 GM116792NIGMS NIH HHS U24 GM129547NIH HHS S10 OD032467
6 · The paper itself

Abstract

HIV-1 infection depends on the integration of viral DNA into host chromatin. Integration is mediated by the viral enzyme integrase and is blocked by integrase strand transfer inhibitors (INSTIs), first-line antiretroviral therapeutics widely used in the clinic. Resistance to even the best INSTIs is a problem, and the mechanisms of resistance are poorly understood. Here, we analyze combinations of the mutations E138K, G140A/S, and Q148H/K/R, which confer resistance to INSTIs. The investigational drug 4d more effectively inhibited the mutants compared with the approved drug Dolutegravir (DTG). We present 11 new cryo-EM structures of drug-resistant HIV-1 intasomes bound to DTG or 4d, with better than 3-Å resolution. These structures, complemented with free energy simulations, virology, and enzymology, explain the mechanisms of DTG resistance involving E138K + G140A/S + Q148H/K/R and show why 4d maintains potency better than DTG. These data establish a foundation for further development of INSTIs that potently inhibit resistant forms in integrase.

Indexed as

HIV IntegraseHIV Integrase InhibitorsDolutegravirMutationOxazinesDolutegravirHIV IntegraseHIV Integrase InhibitorsOxazinesp31 integrase protein, Human immunodeficiency virus 1

Identifiers

PMID37478179
PMCPMC11803526
OpenAlexW4385059738

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.