Evidence map›Paper›PMID 37478074›Full record

ArticlePloS one2023

Homeobox transcription factor HbxA influences expression of over one thousand genes in the model fungus Aspergillus nidulans.

Sandesh S Pandit, Jinfang Zheng, Yanbin Yin, Sophie Lorber, Olivier Puel, Sourabh Dhingra, Eduardo A Espeso, Ana M Calvo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Role of theToxins · 2025
    Article
  2. Engineering of Global Transcriptional Regulators (GTRs) inJournal of fungi (Basel, Switzerland) · 2025
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Role of theJournal of fungi (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Sandesh S PanditDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, United States of America.ORCID 0000-0002-3292-2654
Jinfang ZhengNebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, Nebraska, United States of America.ORCID 0000-0001-5966-7713
Yanbin YinNebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, Nebraska, United States of America.
Sophie LorberToxalim (Research Centre in Food Toxicology), Université de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France.ORCID 0000-0003-0231-6394
Olivier PuelToxalim (Research Centre in Food Toxicology), Université de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France.ORCID 0000-0003-1946-5310
Sourabh DhingraDepartment of Biological Sciences and Eukaryotic Pathogen Innovation Center, Clemson University, Clemson, South Carolina, United States of America.
Eduardo A EspesoDepartment of Cellular and Molecular Biology, Centro de Investigaciones Biológicas Margarita Salas (CSIC), Madrid, Spain.ORCID 0000-0002-5873-6059
Ana M CalvoDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, United States of America.ORCID 0000-0003-4641-5175
Northern Illinois University · USUniversité Toulouse III - Paul Sabatier · FRUniversity of Nebraska–Lincoln · USClemson University · USConsejo Superior de Investigaciones Científicas · ES

Funding

Bioinformatics Discovery of Anti-CRISPR Operons in Human Gut MicrobiomeR21AI171952 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI YIN, YANBIN · 2022 to 2023
$401k
Orphan genes in pathogenic bacteriaR15GM114706 · NIGMS · NORTHERN ILLINOIS UNIVERSITY · PI YIN, YANBIN · 2015 to 2015
$373k
NIAID NIH HHS R21 AI171952NIGMS NIH HHS R15 GM114706
6 · The paper itself

Abstract

In fungi, conserved homeobox-domain proteins are transcriptional regulators governing development. In Aspergillus species, several homeobox-domain transcription factor genes have been identified, among them, hbxA/hbx1. For instance, in the opportunistic human pathogen Aspergillus fumigatus, hbxA is involved in conidial production and germination, as well as virulence and secondary metabolism, including production of fumigaclavines, fumiquinazolines, and chaetominine. In the agriculturally important fungus Aspergillus flavus, disruption of hbx1 results in fluffy aconidial colonies unable to produce sclerotia. hbx1 also regulates production of aflatoxins, cyclopiazonic acid and aflatrem. Furthermore, transcriptome studies revealed that hbx1 has a broad effect on the A. flavus genome, including numerous genes involved in secondary metabolism. These studies underline the importance of the HbxA/Hbx1 regulator, not only in developmental processes but also in the biosynthesis of a broad number of fungal natural products, including potential medical drugs and mycotoxins. To gain further insight into the regulatory scope of HbxA in Aspergilli, we studied its role in the model fungus Aspergillus nidulans. Our present study of the A. nidulans hbxA-dependent transcriptome revealed that more than one thousand genes are differentially expressed when this regulator was not transcribed at wild-type levels, among them numerous transcription factors, including those involved in development as well as in secondary metabolism regulation. Furthermore, our metabolomics analyses revealed that production of several secondary metabolites, some of them associated with A. nidulans hbxA-dependent gene clusters, was also altered in deletion and overexpression hbxA strains compared to the wild type, including synthesis of nidulanins A, B and D, versicolorin A, sterigmatocystin, austinol, dehydroaustinol, and three unknown novel compounds.

Indexed as

Aspergillus nidulansTranscription FactorsFungal ProteinsGene Expression Regulation, FungalGenes, HomeoboxHomeodomain ProteinsHumansFungal ProteinsHomeodomain ProteinsTranscription Factors

Identifiers

PMID37478074
PMCPMC10361519
OpenAlexW4385064822

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.