Evidence map›Paper›PMID 37475965›Full record

ArticleFrontiers in cellular and infection microbiology2023

Novel kinetoplastid-specific cAMP binding proteins identified by RNAi screening for cAMP resistance in

Sabine Bachmaier, Matthew K Gould, Eleni Polatoglou, Radoslaw Omelianczyk, Ana E Brennand, Maha A Aloraini, Jane C Munday, David Horn, Michael Boshart, Harry P de Koning

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  7. FAP20 is required for flagellum assembly inMolecular biology of the cell · 2024
    Article
  8. Adhesion ofmSphere · 2024
    Article
  9. Article
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  11. FAP20 is required for flagellum assembly inbioRxiv : the preprint server for biology · 2024
    Article
  12. Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Sabine BachmaierFaculty of Biology, Genetics, Ludwig-Maximillians University Munich (LMU), Martinsried, Germany.
Matthew K GouldFaculty of Biology, Genetics, Ludwig-Maximillians University Munich (LMU), Martinsried, Germany.
Eleni PolatoglouFaculty of Biology, Genetics, Ludwig-Maximillians University Munich (LMU), Martinsried, Germany.
Radoslaw OmelianczykFaculty of Biology, Genetics, Ludwig-Maximillians University Munich (LMU), Martinsried, Germany.
Ana E BrennandFaculty of Biology, Genetics, Ludwig-Maximillians University Munich (LMU), Martinsried, Germany.
Maha A AlorainiInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Jane C MundayInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
David HornThe Wellcome Centre for Anti-Infectives Research, School of Life Sciences, University of Dundee, Dundee, United Kingdom.
Michael BoshartFaculty of Biology, Genetics, Ludwig-Maximillians University Munich (LMU), Martinsried, Germany.
Harry P de KoningInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Ludwig-Maximilians-Universität München · DEUniversity of Glasgow · GBWellcome Centre for Anti-Infectives Research · GB

Funding

Medical Research Council G0701258Wellcome TrustWellcome Trust 217105/Z/19/Z
6 · The paper itself

Abstract

Cyclic AMP signalling in trypanosomes differs from most eukaryotes due to absence of known cAMP effectors and cAMP independence of PKA. We have previously identified four genes from a genome-wide RNAi screen for resistance to the cAMP phosphodiesterase (PDE) inhibitor NPD-001. The genes were named cAMP Response Protein (CARP) 1 through 4. Here, we report an additional six CARP candidate genes from the original sample, after deep sequencing of the RNA interference target pool retrieved after NPD-001 selection (RIT-seq). The resistance phenotypes were confirmed by individual RNAi knockdown. Highest level of resistance to NPD-001, approximately 17-fold, was seen for knockdown of CARP7 (Tb927.7.4510). CARP1 and CARP11 contain predicted cyclic AMP binding domains and bind cAMP as evidenced by capture and competition on immobilised cAMP. CARP orthologues are strongly enriched in kinetoplastid species, and CARP3 and CARP11 are unique to

Indexed as

Trypanosoma brucei bruceiCyclic AMPFlagellaProtozoan ProteinsRNA InterferenceSignal TransductionCyclic AMPProtozoan Proteinsadenylate cyclasecAMPCARPflagellumNPD-001RNAi screeningTrypanosoma brucei

Identifiers

PMID37475965
PMCPMC10354285
OpenAlexW4383223833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.