Evidence map›Paper›PMID 37474918›Full record

ArticleBMC cancer2023

Vaginal microbiome community state types and high-risk human papillomaviruses in cervical precancer and cancer in North-central Nigeria.

Jonah Musa, Mamoudou Maiga, Stefan J Green, Francis A Magaji, Ali J Maryam, Mark Okolo, Chuwang J Nyam, Nanma T Cosmas, Olugbenga A Silas, Godwin E Imade and 10 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. The Interplay Between Cervicovaginal Microbiota Diversity,Healthcare (Basel, Switzerland) · 2025
    Review
  10. The vaginal microbiome in HPV persistence and cervical cancer progression.Frontiers in cellular and infection microbiology · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 3 countries.

Jonah MusaDepartment of Obstetrics and Gynecology, College of Health Sciences, University of Jos, Jos, Plateau State, Nigeria. Jonah.musa@northwestern.edu.
Mamoudou MaigaDepartment of Preventive Medicine, Division of Cancer Epidemiology and Prevention, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Stefan J GreenGenomics and Microbiome Core Facility, Rush University, Chicago, IL, USA.
Francis A MagajiDepartment of Obstetrics and Gynecology, College of Health Sciences, University of Jos, Jos, Plateau State, Nigeria.
Ali J MaryamDepartment of Preventive Medicine, Division of Cancer Epidemiology and Prevention, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Mark OkoloDepartment of Medical Microbiology, College of Health Sciences, University of Jos, Jos, Nigeria.
Chuwang J NyamDivision of Epidemiology and Biostatistics, School of Public Health, University of Illinois at Chicago, Chicago, IL, USA.
Nanma T CosmasDepartment of Medical Microbiology, College of Health Sciences, University of Jos, Jos, Nigeria.
Olugbenga A SilasDepartment of Anatomic Pathology and Forensic Medicine, College of Health Sciences, University of Jos, Jos, Nigeria.
Godwin E ImadeDepartment of Obstetrics and Gynecology, College of Health Sciences, University of Jos, Jos, Plateau State, Nigeria.
Yinan ZhengDepartment of Preventive Medicine, Division of Cancer Epidemiology and Prevention, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Brian T JoyceDepartment of Preventive Medicine, Division of Cancer Epidemiology and Prevention, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Brehima DiakiteUniversity of Sciences, Technique and Technologies of Bamako, Bamako, Mali.
Imran Morhason-BelloDepartment of Obstetrics and Gynecology, College of Medicine, University of Ibadan, Ibadan, Nigeria.
Chad J AchenbachDivision of Infectious Diseases, Department of Medicine, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Atiene S SagayDepartment of Obstetrics and Gynecology, College of Health Sciences, University of Jos, Jos, Plateau State, Nigeria.
Innocent A O UjahDepartment of Obstetrics and Gynecology, College of Health Sciences, University of Jos, Jos, Plateau State, Nigeria.
Robert L MurphyDepartment of Obstetrics and Gynecology, College of Medicine, University of Ibadan, Ibadan, Nigeria.
Lifang HouDepartment of Preventive Medicine, Division of Cancer Epidemiology and Prevention, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Supriya Dinesh MehtaDivision of Epidemiology and Biostatistics, School of Public Health, University of Illinois at Chicago, Chicago, IL, USA.
Northwestern University · USUniversity of Jos · NGUniversity of Ibadan · NGUniversity of Illinois Chicago · USBenue State University · NGRobert H. Lurie Comprehensive Cancer Center of Northwestern UniversityRush University · USUniversité des Sciences, des Techniques et des Technologies de Bamako · ML

Funding

Research Mentoring and Building Capacity of underrepresented Minority Research Scientists in India.D43TW010540 · FIC · YALE UNIVERSITY · PI MICHELE BARRY, Eva Harris · 2017 to 2026
$15.5M
Pathology and Genomics CoreU54CA221205 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HOU, LIFANG, MURPHY, ROBERT LEO · 2017 to 2021
$4.2M
Northwestern/Nigeria Research Training Program in HIV and Malignancies (NN-HAM)D43TW009575 · FIC · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Chad J Achenbach, Jonah Musa · 2014 to 2026
$4.1M
West Africa Self-Sampling HPV Based Cervical Cancer Control Program (WA-SS-HCCP) for WLWHA: Barriers, challenges, and needsU01CA275129 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JANE Louise HOLL, Lifang Hou · 2022 to 2026
$3.2M
Global Hypomethylation Biomarkers for Cervical Cancer Screening in Women Living with HIV in LMICsR21TW012092 · FIC · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SILAS, OLUGBENGA AKINDELE, ZHENG, YINAN · 2021 to 2022
$440k
Vaginal Microbiome in Cervical Intraepithelial Neoplasia and CancerK43TW011416 · FIC · UNIVERSITY OF JOS · PI MUSA, JONAH · 2019 to 2022
$372k
FIC NIH HHS D43 TW009575FIC NIH HHS D43 TW010540FIC NIH HHS K43 TW011416FIC NIH HHS K43TW011416FIC NIH HHS R21 TW012092NCI NIH HHS U01 CA275129NCI NIH HHS U54 CA221205NCI NIH HHS U54CA221205
6 · The paper itself

Abstract

backgroundHigh risk human papillomaviruses (HR-HPV) have a causal role in cervical oncogenesis, and HIV-mediated immune suppression allows HR-HPV to persist. We studied whether vaginal microbiome community state types (CSTs) are associated with high-grade precancer and/or invasive cervical cancer (HSIL/ICC).

methodsThis was a cross-sectional study of adult women with cervical cancer screening (CCS) at the Jos University Teaching Hospital (JUTH) in Jos, Nigeria, between January 2020 and February 2022. Cervical swabs underwent HPV genotyping (Anyplex™ II HPV28). Cervico-vaginal lavage (CVL) sample was collected for 16 S rRNA gene amplicon sequencing. We used multivariable logistic regression modelling to assess associations between CSTs and other factors associated with HSIL/ICC.

resultsWe enrolled 155 eligible participants, 151 with microbiome data for this analysis. Women were median age 52 (IQR:43-58), 47.7% HIV positive, and 58.1% with HSIL/ICC. Of the 138 with HPV data, 40.6% were negative for HPV, 10.1% had low-risk HPV, 26.8% had single HR-HPV, and 22.5% had multiple HR-HPV types. The overall prevalence of any HR-HPV type (single and multiple) was 49.3%, with a higher proportion in women with HSIL/ICC (NILM 31.6%, LSIL 46.5%, HSIL 40.8%, and 81.5% ICC; p = 0.007). Women with HIV were more likely to have HSIL/ICC (70.3% vs. 29.7% among women without HIV). In crude and multivariable analysis CST was not associated with cervical pathology (CST-III aOR = 1.13, CST-IV aOR = 1.31). However, in the presence of HR-HPV CST-III (aOR = 6.7) and CST-IV (aOR = 3.6) showed positive association with HSIL/ICC.

conclusionVaginal microbiome CSTs were not significantly associated with HSIL/ICC. Our findings suggest however, that CST could be helpful in identifying women with HSIL/ICC and particularly those with HR-HPV. Characterization of CSTs using point-of-care molecular testing in women with HR-HPV should be studied as an approach to improve early detection and cervical cancer prevention. Future longitudinal research will improve our understanding of the temporal effect of non-optimal CST, HR-HPV, and other factors in cervical cancer development, prevention, and control.

Indexed as

GardnerellaHuman Papillomavirus VirusesLactobacillusMicrobiotaPrecancerous ConditionsUterine Cervical NeoplasmsAdultCross-Sectional StudiesFemaleHumansMiddle AgedNeoplasm GradingNigeriaRiskCervical precancer and cancerHigh-risk HPVHIVVaginal microbiome

Identifiers

PMID37474918
PMCPMC10360349
OpenAlexW4384922624

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.