Evidence map›Paper›PMID 37474605›Full record

ArticleNature communications2023

Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.

Xiang Feng, Michelle M Spiering, Ruda de Luna Almeida Santos, Stephen J Benkovic, Huilin Li

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. DNA polymerase α-primase can function as a translesion DNA polymerase.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Xiang Feng *Department of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.ORCID 0000-0002-4441-3152
Michelle M Spiering *Department of Chemistry, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0002-6222-980X
Ruda de Luna Almeida SantosDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.
Stephen J BenkovicDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA. sjb1@psu.edu.ORCID 0000-0003-3680-3481
Huilin LiDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA. huilin.li@vai.org.ORCID 0000-0001-8085-8928
Van Andel Institute · USPennsylvania State University · US

Funding

PHOSPHATE ACTIVATION MECHANISMSR01GM013306 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BENKOVIC, STEPHEN J · 1985 to 2022
$10.0M
Structural mechanism of DNA replicationR35GM131754 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2019 to 2026
$6.0M
NIGMS NIH HHS R01 GM013306NIGMS NIH HHS R35 GM131754
6 · The paper itself

Abstract

The T4 bacteriophage gp41 helicase and gp61 primase assemble into a primosome to couple DNA unwinding with RNA primer synthesis for DNA replication. How the primosome is assembled and how the primer length is defined are unclear. Here we report a series of cryo-EM structures of T4 primosome assembly intermediates. We show that gp41 alone is an open spiral, and ssDNA binding triggers a large-scale scissor-like conformational change that drives the ring closure and activates the helicase. Helicase activation exposes a cryptic hydrophobic surface to recruit the gp61 primase. The primase binds the helicase in a bipartite mode in which the N-terminal Zn-binding domain and the C-terminal RNA polymerase domain each contain a helicase-interacting motif that bind to separate gp41 N-terminal hairpin dimers, leading to the assembly of one primase on the helicase hexamer. Our study reveals the T4 primosome assembly process and sheds light on the RNA primer synthesis mechanism.

Indexed as

Bacteriophage T4DNA PrimaseDNA HelicasesDNA PrimersDNA ReplicationDNA, ViralDNA HelicasesDNA PrimaseDNA PrimersDNA, Viral

Identifiers

PMID37474605
PMCPMC10359460
OpenAlexW4384926090

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.