Evidence map›Paper›PMID 37474505›Full record

ArticleNature communications2023

Antiviral HIV-1 SERINC restriction factors disrupt virus membrane asymmetry.

Susan A Leonhardt, Michael D Purdy, Jonathan R Grover, Ziwei Yang, Sandra Poulos, William E McIntire, Elizabeth A Tatham, Satchal K Erramilli, Kamil Nosol, Kin Kui Lai and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 34 citations in OpenAlex.

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  19. SERINC4 is dispensable for male fertility and spermatogenesis in mice.American journal of translational research · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Susan A Leonhardt *The Phillip and Patricia Frost Institute for Chemistry and Molecular Science, University of Miami, Coral Gables, FL, 33146, USA.
Michael D Purdy *Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.
Jonathan R Grover *Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06510, USA.
Ziwei Yang *Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06510, USA.
Sandra PoulosDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.
William E McIntireThe Phillip and Patricia Frost Institute for Chemistry and Molecular Science, University of Miami, Coral Gables, FL, 33146, USA.
Elizabeth A TathamDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.
Satchal K ErramilliDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, 60637, USA.
Kamil NosolDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-2865-9125
Kin Kui LaiHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, P.O. Box B, Building 535, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0003-2694-6243
Shilei DingCentre de Recherche du CHUM (CRCHUM), Montreal, QC, Canada.
Maolin LuDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06510, USA.ORCID http://orcid.org/0000-0002-8099-6447
Pradeep D UchilDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06510, USA.
Andrés FinziCentre de Recherche du CHUM (CRCHUM), Montreal, QC, Canada.
Alan ReinHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, P.O. Box B, Building 535, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0002-8273-546X
Anthony A KossiakoffDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-3174-9359
Walther MothesDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06510, USA. walther.mothes@yale.edu.ORCID http://orcid.org/0000-0002-3367-7240
Mark YeagerThe Phillip and Patricia Frost Institute for Chemistry and Molecular Science, University of Miami, Coral Gables, FL, 33146, USA. yeager@miami.edu.ORCID http://orcid.org/0000-0002-3301-640X
Yale University · USUniversity of Chicago · USUniversity of Miami · USUniversity of Virginia · USCentre Hospitalier de l’Université de Montréal · CANational Institutes of Health · US

Funding

NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
CHEETAH Center for the Structural Biology of HIV Infection, Restriction, and Viral DynamicsU54AI170856 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Pamela J Bjorkman · 2022 to 2026
$34.4M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01AI150471 · NIAID · DREXEL UNIVERSITY · PI HENDRICKSON, WAYNE A. · 2019 to 2022
$7.8M
Search for XMRVZIABC011325 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REIN, ALAN · 2010 to 2025
$6.2M
Chaperone-Assisted Structure Determination of Membrane ProteinsR01GM117372 · NIGMS · UNIVERSITY OF CHICAGO · PI ANTHONY A KOSSIAKOFF · 2016 to 2026
$4.0M
Molecular Electron Microscopy Core Facility ImprovementsG20RR031199 · NCRR · UNIVERSITY OF VIRGINIA · PI SHUPNIK, MARGARET A · 2010 to 2010
$2.0M
300 keV Liquid Helium Robotic MicroscopeS10RR025067 · NCRR · UNIVERSITY OF VIRGINIA · PI EGELMAN, EDWARD H. · 2009 to 2009
$2.0M
Direct Electron Detector for a Titan Krios Robotic Electron Cryo-MicroscopeS10OD018149 · OD · UNIVERSITY OF VIRGINIA · PI EGELMAN, EDWARD H., YEAGER, MARK JAY · 2014 to 2014
$500k
NCRR NIH HHS G20 RR031199NCRR NIH HHS S10 RR025067NIAID NIH HHS P01 AI150471NIAID NIH HHS U54 AI170856NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R01 GM117372NIGMS NIH HHS U24 GM129539NIH HHS S10 OD018149
6 · The paper itself

Abstract

The host proteins SERINC3 and SERINC5 are HIV-1 restriction factors that reduce infectivity when incorporated into the viral envelope. The HIV-1 accessory protein Nef abrogates incorporation of SERINCs via binding to intracellular loop 4 (ICL4). Here, we determine cryoEM maps of full-length human SERINC3 and an ICL4 deletion construct, which reveal that hSERINC3 is comprised of two α-helical bundles connected by a ~ 40-residue, highly tilted, "crossmember" helix. The design resembles non-ATP-dependent lipid transporters. Consistently, purified hSERINCs reconstituted into proteoliposomes induce flipping of phosphatidylserine (PS), phosphatidylethanolamine and phosphatidylcholine. Furthermore, SERINC3, SERINC5 and the scramblase TMEM16F expose PS on the surface of HIV-1 and reduce infectivity, with similar results in MLV. SERINC effects in HIV-1 and MLV are counteracted by Nef and GlycoGag, respectively. Our results demonstrate that SERINCs are membrane transporters that flip lipids, resulting in a loss of membrane asymmetry that is strongly correlated with changes in Env conformation and loss of infectivity.

Indexed as

HIV-1HIV InfectionsAntiviral AgentsAntiviral Restriction FactorsHumansMembrane GlycoproteinsMembrane ProteinsAntiviral AgentsAntiviral Restriction FactorsMembrane GlycoproteinsMembrane ProteinsSERINC3 protein, humanSERINC5 protein, human

Identifiers

PMID37474505
PMCPMC10359404
OpenAlexW4384924888

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.