Evidence map›Paper›PMID 37471639›Full record

ArticleHuman molecular genetics2023

Candidate pathway analysis of surfactant proteins identifies CTSH and SFTA2 that influences lung cancer risk.

Jennifer Luyapan, Yohan Bossé, Zhonglin Li, Xiangjun Xiao, Albert Rosenberger, Rayjean J Hung, Stephen Lam, Shanbeh Zienolddiny, Geoffrey Liu, Lambertus A Kiemeney and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. High-Penetrance Rare Variants Underlying Familial Lung Cancer Risk: Insights From Genetic Epidemiology of Lung Cancer Consortium.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2026
    Article
  3. Article
  4. Advances in the Basic Sciences in Thoracic Oncology in the Last 20 Years and Their Translational Impact.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 20 institutions in 9 countries.

Jennifer LuyapanQuantitative Biomedical Science Program, Geisel School of Medicine, Dartmouth College, Hanover, NH 03755, USA.ORCID 0000-0001-6040-6860
Yohan BosséInstitut Universitaire de Cardiologie et de Pneumologie de Québec, Université Laval, Quebec City, G1V 0A6, Canada.
Zhonglin LiInstitut Universitaire de Cardiologie et de Pneumologie de Québec, Université Laval, Quebec City, G1V 0A6, Canada.
Xiangjun XiaoDepartment of Medicine, Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.
Albert RosenbergerInstitut für Genetische Epidemiologie, Georg-August-Universität Göttingen, Gottingen, Niedersachsen, Germany.
Rayjean J HungProsserman Centre for Population Health Research, Lunenfeld-Tanenbuaum Research Institute, Sinai Health System, Toronto, ON, M5G 1X5, Canada.
Stephen LamDepartment of Integrative Oncology, British Columbia Cancer Agency, Vancouver, BC, V5Z 4E6, Canada.
Shanbeh ZienolddinyDepartment of Toxicology, National Institute of Occupational Health, Oslo 0033, Norway.
Geoffrey LiuPrincess Margaret Cancer Centre, Princess Margaret Research Institute, Epidemiology Division,Toronto, ON, M5G 1L7, Canada.
Lambertus A KiemeneyDepartment for Health Evidence, Radboud University Medical Center, Nijmegen, 6525 GA, the Netherlands.
Chu ChenProgram in Epidemiology, Division of Public Health Sciences, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA.
James McKayInternational Agency for Research on Cancer (IARC/WHO), Genomic Epidemiology Branch Lyon 69008, France.
Mattias JohanssonInternational Agency for Research on Cancer (IARC/WHO), Genomic Epidemiology Branch Lyon 69008, France.
Mikael JohanssonDepartment of Radiation Sciences, Oncology, Umeå University, Umeå, 901 87, Sweden.
Adonina TardonHealth Research Institute of the Principality of Asturias, University of Oviedo and CIBERSP, Oviedo, Asturias, 33071, Spain.
Guillermo Fernandez-TardonHealth Research Institute of the Principality of Asturias, University of Oviedo and CIBERSP, Oviedo, Asturias, 33071, Spain.
Paul BrennanInstitute of Medical Informatics, Biometry and Epidemiology, Chair of Epidemiology, Ludwig Maximillians University, Munich, Bavaria, 80539, Germany.
John K FieldMolecular and Clinical Cancer Medicine, Roy Castle Lung Cancer Research Programme, The University of Liverpool Institute of Translational Medicine, Liverpool, L69 7ZX, UK.
Michael P DaviesMolecular and Clinical Cancer Medicine, Roy Castle Lung Cancer Research Programme, The University of Liverpool Institute of Translational Medicine, Liverpool, L69 7ZX, UK.
Penella J WollAcademic Unit of Clinical Oncology, University of Sheffield, Sheffield, S10 2AH, UK.
Angela CoxDepartment of Oncology and Metabolism, University of Sheffield, Sheffield, S10 2AH, UK.
Fiona TaylorDepartment of Oncology and Metabolism, University of Sheffield, Sheffield, S10 2AH, UK.
Susanne M ArnoldDivision of Medical Oncology, Cancer Center, University of Kentucky, Lexington, KY 40508, USA.
Philip LazarusDepartment of Pharmaceutical Sciences, College of Pharmacy and Pharmaceutical Sciences, Washington State University, Spokane, WA, 99163, USA.
Kjell GrankvistDepartment of Medical Biosciences, Clinical Chemistry, Umeå University, Umeå, 901 87, Sweden.
Maria T LandiDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
David C ChristianiDepartment of Environmental Health, Harvard School of Public Health, Boston, MA 02115, USA.
Todd A MacKenzieQuantitative Biomedical Science Program, Geisel School of Medicine, Dartmouth College, Hanover, NH 03755, USA.
Christopher I AmosQuantitative Biomedical Science Program, Geisel School of Medicine, Dartmouth College, Hanover, NH 03755, USA.
Centre international de recherche sur le cancer · FRDartmouth College · USUniversity of Sheffield · GBInstitut universitaire de cardiologie et de pneumologie de Québec · CAUniversidad de Oviedo · ESUniversity of Liverpool · GBBaylor College of Medicine · USBC Cancer Agency · CAFred Hutch Cancer Center · USMassachusetts Department of Public Health · USNational Cancer Institute · USNational Institute of Occupational Health · NOPrincess Margaret Cancer Centre · CARadboud University Nijmegen · NLSinai Health System · CAUmeå University · SEUniversity of Göttingen · DEUniversity of Kentucky · USWashington State University Spokane · USZimmer Biomet (Germany) · DE

Funding

University of Kentucky Markey Cancer Center Support Grant ECIA SupplementP30CA177558 · NCI · UNIVERSITY OF KENTUCKY · PI Jennifer F Rogers · 2013 to 2026
$38.3M
Translating Molecular and Clinical Data to Population Lung Cancer Risk AssessmentU19CA203654 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Christopher I. Amos · 2017 to 2026
$23.7M
The Boston Lung Cancer Survival CohortU01CA209414 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI David C Christiani · 2017 to 2026
$12.2M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Quantitative Biomedical Sciences at DartmouthT32LM012204 · NLM · DARTMOUTH COLLEGE · PI TOSTESON, TOR D · 2016 to 2020
$876k
NCI NIH HHS P30 CA177558NCI NIH HHS R35 CA197449NCI NIH HHS U01 CA209414NCI NIH HHS U19 CA203654NLM NIH HHS T32 LM012204World Health Organization 001
6 · The paper itself

Abstract

Pulmonary surfactant is a lipoprotein synthesized and secreted by alveolar type II cells in lung. We evaluated the associations between 200,139 single nucleotide polymorphisms (SNPs) of 40 surfactant-related genes and lung cancer risk using genotyped data from two independent lung cancer genome-wide association studies. Discovery data included 18,082 cases and 13,780 controls of European ancestry. Replication data included 1,914 cases and 3,065 controls of European descent. Using multivariate logistic regression, we found novel SNPs in surfactant-related genes CTSH [rs34577742 C > T, odds ratio (OR) = 0.90, 95% confidence interval (CI) = 0.89-0.93, P = 7.64 × 10-9] and SFTA2 (rs3095153 G > A, OR = 1.16, 95% CI = 1.10-1.21, P = 1.27 × 10-9) associated with overall lung cancer in the discovery data and validated in an independent replication data-CTSH (rs34577742 C > T, OR = 0.88, 95% CI = 0.80-0.96, P = 5.76 × 10-3) and SFTA2 (rs3095153 G > A, OR = 1.14, 95% CI = 1.01-1.28, P = 3.25 × 10-2). Among ever smokers, we found SNPs in CTSH (rs34577742 C > T, OR = 0.89, 95% CI = 0.85-0.92, P = 1.94 × 10-7) and SFTA2 (rs3095152 G > A, OR = 1.20, 95% CI = 1.14-1.27, P = 4.25 × 10-11) associated with overall lung cancer in the discovery data and validated in the replication data-CTSH (rs34577742 C > T, OR = 0.88, 95% CI = 0.79-0.97, P = 1.64 × 10-2) and SFTA2 (rs3095152 G > A, OR = 1.15, 95% CI = 1.01-1.30, P = 3.81 × 10-2). Subsequent transcriptome-wide association study using expression weights from a lung expression quantitative trait loci study revealed genes most strongly associated with lung cancer are CTSH (PTWAS = 2.44 × 10-4) and SFTA2 (PTWAS = 2.32 × 10-6).

Indexed as

Lung NeoplasmsPulmonary SurfactantsCathepsin HGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansLungPolymorphism, Single NucleotideSurface-Active AgentsCathepsin HCTSH protein, humanPulmonary SurfactantsSurface-Active Agents

Identifiers

PMID37471639
PMCPMC10481107
OpenAlexW4384924325

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.