ReviewNature cell biology2023
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Erratum issuedOpen access · bronzeAbstract readReview
In one paragraph
Review in Nature cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 127 papers.
0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
24.8field-weighted citation impact, top 1% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
127 citing papers in PubMed, 159 citations in OpenAlex.
- Multiscale harmonization, semantic integration, and immersive exploration of single-cell data in support of novel biological insights.bioRxiv : the preprint server for biology · 2026Article
- Mapping ovarian cellular and molecular landscape across the lifespan of women: a scoping review.Human reproduction update · 2026Article
- Computational Mass Spectrometry Imaging in the Era of AI.Chemical reviews · 2026Review
- HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues.ArXiv · 2026Article
- SpatioTemporal Omics Consortium: a global effort for biological discovery across species, space and time.Nature methods · 2026Article
- NicheTrans: spatial-aware cross-omics translation.Nature methods · 2026Article
- Organism-scale annotation with Pan-human Azimuth.bioRxiv : the preprint server for biology · 2026Article
- A 3D spatial proteomic map of the human pancreatic islet microenvironment.Research square · 2026Article
- The HuBMAP Framework for Advancing Data FAIRness.bioRxiv : the preprint server for biology · 2026Article
- Synergistic immunomodulatory combinations induce robust human tolerogenic dendritic cells for antigen-specific regulatory T cell generation.The Journal of pharmacology and experimental therapeutics · 2026Article
- DigitAb: Domain-Adaptive Cell Type Prediction Method from Light Microscopy Images.bioRxiv : the preprint server for biology · 2026Article
- Optically switchable CLEAR probes enable rapid, biocompatible and high-efficiency fluorophore exchange for ultra-plex, high-resolution immunofluorescence imaging.Chemical science · 2026Article
- Article
- Advancing single-cell omics and cell-based therapeutics with quantum computing.Nature reviews. Molecular cell biology · 2026Review
- Article
- A Community Standard Multispecies Cell Atlas of the Basal Ganglia.bioRxiv : the preprint server for biology · 2026Article
- Integration of large, complex single-cell datasets with Harmony2.bioRxiv : the preprint server for biology · 2026Article
- Cell Type Populations for 3D Anatomical Structures of the Human Reference Atlas.Scientific data · 2026Article
- SpatioFreq: A Deep Learning Framework for Decoding Cellular and Tissue Landscapes Across Organisms Using Spatial Transcriptomics.Interdisciplinary sciences, computational life sciences · 2026Article
- A Multimodal Imaging Pipeline for the Discovery of Molecular Markers of Cellular Neighborhoods.bioRxiv : the preprint server for biology · 2026Article
67 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
27 authors at 20 institutions in 4 countries.
Sanjay Jain *Department of Medicine, Washington University School of Medicine, St Louis, MO, USA. sanjayjain@wustl.edu.ORCID http://orcid.org/0000-0003-2804-127X
Liming Pei *Center for Mitochondrial and Epigenomic Medicine, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, and Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. lpei@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-1924-0333
Jeffrey M Spraggins *Department of Cell and Developmental Biology and the Mass Spectrometry Research Center, Vanderbilt University School of Medicine, Nashville, TN, USA. jeff.spraggins@vanderbilt.edu.ORCID http://orcid.org/0000-0001-9198-5498
Michael AngeloDepartment of Pathology, Stanford School of Medicine, Stanford, CA, USA.
James P CarsonTexas Advanced Computing Center, University of Texas at Austin, Austin, TX, USA.
Nils GehlenborgDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Fiona GintyGE Research Center, Niskayuna, NY, USA.
Joana P GonçalvesDepartment of Intelligent Systems, Delft University of Technology, Delft, Netherlands.ORCID http://orcid.org/0000-0001-6072-9627
James S HagoodDepartment of Pediatrics (Pulmonology) and Program for Rare and Interstitial Lung Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0003-3938-0330
John W HickeyDepartment of Microbiology and Immunology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9961-7673
Neil L KelleherDepartments of Medicine, Chemistry and Molecular Biosciences, Northwestern University, Evanston, IL, USA.ORCID http://orcid.org/0000-0002-8815-3372
Louise C LaurentDepartment of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA.
Shin LinDivision of Cardiology, University of Washington School of Medicine, Seattle, WA, USA.
Yiing LinDepartment of Surgery, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-0317-7608
Huiping LiuDepartments of Pharmacology, Medicine (Hematology and Oncology), Lurie Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-4822-7995
Alexandra NabaDepartment of Physiology and Biophysics, University of Illinois at Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-4796-5614
Ernesto S NakayasuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-4056-2695
Wei-Jun QianBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-5393-2827
Andrea RadtkeLymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-4379-8967
Paul RobsonThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID http://orcid.org/0000-0002-0191-3958
Brent R StockwellDepartment of Biological Sciences and Department of Chemistry, Columbia University, New York, NY, USA.
Raf Van de PlasDelft Center for Systems and Control, Delft University of Technology, Delft, Netherlands.
Ioannis S VlachosBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Mowei ZhouEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
HuBMAP Consortium
Katy Börner *Department of Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA. katy@indiana.edu.ORCID http://orcid.org/0000-0002-3321-6137
Michael P Snyder *Department of Genetics, Stanford School of Medicine, Stanford, CA, USA. mpsnyder@stanford.edu.ORCID http://orcid.org/0000-0003-0784-7987
Stanford University · USUniversity of California San Diego · USHarvard University · USPittsburgh Supercomputing Center · USUniversity of Pennsylvania · USUniversity of Florida · USPacific Northwest National Laboratory · USIndiana University Bloomington · USVanderbilt University · USUniversity of Pittsburgh · USCarnegie Mellon University · USChildren's Hospital of Philadelphia · USUniversity of Connecticut · USBroad Institute · USWashington University in St. Louis · USBeth Israel Deaconess Medical Center · USGE Global Research (United States) · USJohns Hopkins University · USNorthwestern University · USNew York Genome Center · US
Funding
SenNet Supplement - Consortium BenchmarkingU24CA268108 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Philip D. Blood, JONATHAN C. SILVERSTEIN · 2021 to 2026
$22.1MCentral Hub for Kidney Precision MedicineU24DK114886 · NIDDK · UNIVERSITY OF WASHINGTON · PI Jonathan Himmelfarb, Matthias Kretzler · 2022 to 2026
$21.1MConProject-002U2CDK114886 · NIDDK · UNIVERSITY OF WASHINGTON · PI KRETZLER, MATTHIAS · 2017 to 2021
$21.0MFlexible Hybrid Cloud Infrastructure for Seamless Integration and Use of Human Biomolecular Data and Reference Maps [1 of 5]OT2OD033759 · OD · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D., SILVERSTEIN, JONATHAN C. · 2022 to 2025
$20.4MMedical Scientist Training ProgramT32GM136577 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ANDREA L COX · 2020 to 2026
$13.4MThe Human Lung BioMolecular Multi-Scale Atlas Program (HuBMAP-Lung)U54HL165443 · NHLBI · UNIVERSITY OF ROCHESTER · PI PRYHUBER, GLORIA S · 2022 to 2025
$8.0MKidney single cell and spatial molecular atlas project - KIDSSMAPU54DK134301 · NIDDK · WASHINGTON UNIVERSITY · PI ASHKAR, TAREK MAURICE, JAIN, SANJAY · 2022 to 2025
$7.8MOrgan Specific Project - HeartU54HL165442 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI MOFFITT, JEFFREY, PEI, LIMING · 2022 to 2025
$7.6M3D Multiscale Biomolecular Human Reference Atlas Construction, Visualization and Usage [4 of 5]OT2OD033756 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI BORNER, KATY · 2022 to 2025
$7.4MVanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Mapping of the Human KidneyU54DK134302 · NIDDK · VANDERBILT UNIVERSITY · PI CAPRIOLI, RICHARD M, SPRAGGINS, JEFFREY M · 2022 to 2025
$7.1MOrgan Specific ProjectU54HL165440 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI HONG, YOUNG-KWON, SINGHAL, DHRUV · 2022 to 2025
$5.8MVanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Tissue MappingU54DK120058 · NIDDK · VANDERBILT UNIVERSITY · PI HARRIS, RAYMOND C. · 2018 to 2021
$5.7MNCI NIH HHS R01 CA245699NCI NIH HHS T32 CA196585NCI NIH HHS U24 CA268108NCI NIH HHS UG3 CA256959NCI NIH HHS UG3 CA256967NCI NIH HHS UH3 CA246594NCI NIH HHS UH3 CA246633NCI NIH HHS UH3 CA246635NEI NIH HHS U54 EY032442NHGRI NIH HHS U01 HG012680NHGRI NIH HHS U54 HG010426NHLBI NIH HHS R01 HL157991NHLBI NIH HHS U01 HL166058NHLBI NIH HHS U01 HL166060NHLBI NIH HHS U54 HL145608NHLBI NIH HHS U54 HL145611NHLBI NIH HHS U54 HL165440NHLBI NIH HHS U54 HL165442NHLBI NIH HHS U54 HL165443NIAMS NIH HHS R01 AR074285NIAMS NIH HHS R01 AR079233NIAMS NIH HHS U54 AR081775NICHD NIH HHS K12 HD105271NICHD NIH HHS U54 HD104393NIDDK NIH HHS P50 DK133943NIDDK NIH HHS R01 DK123329NIDDK NIH HHS T32 DK101003NIDDK NIH HHS U01 DK114933NIDDK NIH HHS U24 DK114886NIDDK NIH HHS U24 DK135157NIDDK NIH HHS U2C DK114886NIDDK NIH HHS U54 DK120058NIDDK NIH HHS U54 DK127823NIDDK NIH HHS U54 DK134301NIDDK NIH HHS U54 DK134302NIGMS NIH HHS T32 GM136577NIH HHS OT2 OD026671NIH HHS OT2 OD033753NIH HHS OT2 OD033756NIH HHS OT2 OD033758NIH HHS OT2 OD033759
Abstract
The Human BioMolecular Atlas Program (HuBMAP) aims to create a multi-scale spatial atlas of the healthy human body at single-cell resolution by applying advanced technologies and disseminating resources to the community. As the HuBMAP moves past its first phase, creating ontologies, protocols and pipelines, this Perspective introduces the production phase: the generation of reference spatial maps of functional tissue units across many organs from diverse populations and the creation of mapping tools and infrastructure to advance biomedical research.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.