Evidence map›Paper›PMID 37468638›Full record

ArticleNature2023

Mega-scale experimental analysis of protein folding stability in biology and design.

Kotaro Tsuboyama, Justas Dauparas, Jonathan Chen, Elodie Laine, Yasser Mohseni Behbahani, Jonathan J Weinstein, Niall M Mangan, Sergey Ovchinnikov, Gabriel J Rocklin

Abstract read
In one paragraph

Article in Nature, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 189 papers.

0numbers the graph read from it
0cells of the map it votes in
189citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

189 citing papers in PubMed.

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  16. Beyond native sequence recovery: Improved modeling of the sequence-energy landscape of protein structures.Proceedings of the National Academy of Sciences of the United States of America · 2026
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129 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kotaro TsuboyamaDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Justas DauparasDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Jonathan ChenDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Elodie LaineSorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
Yasser Mohseni BehbahaniSorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
Jonathan J WeinsteinDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Niall M ManganCenter for Synthetic Biology, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-3491-8341
Sergey OvchinnikovJohn Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA, USA.ORCID 0000-0003-2774-2744
Gabriel J RocklinDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA. grocklin@gmail.com.ORCID 0000-0003-2253-5631

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Advances in DNA sequencing and machine learning are providing insights into protein sequences and structures on an enormous scale

Indexed as

BiologyProtein EngineeringProtein FoldingProteinsAmino AcidsDNA, ComplementaryMutationProtein DomainsProtein StabilityProteolysisThermodynamicsAmino AcidsDNA, ComplementaryProteins

Identifiers

PMID37468638
PMCPMC10412457

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.