Evidence map›Paper›PMID 37468166›Full record

ArticleLife science alliance2023

A SAM-key domain required for enzymatic activity of the Fun30 nucleosome remodeler.

Leonhard A Karl, Lorenzo Galanti, Susanne Cs Bantele, Felix Metzner, Barbara Šafarić, Lional Rajappa, Benjamin Foster, Vanessa Borges Pires, Priyanka Bansal, Erika Chacin and 6 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Leonhard A KarlDNA Replication and Genome Integrity, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID https://orcid.org/0000-0001-7036-0501
Lorenzo GalantiDNA Replication and Genome Integrity, Max Planck Institute of Biochemistry, Martinsried, Germany.
Susanne Cs BanteleDNA Replication and Genome Integrity, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID https://orcid.org/0000-0002-2393-3626
Felix MetznerGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität, Munich, Germany.
Barbara ŠafarićStructure and Dynamics of Molecular Machines, Max Planck Institute of Biochemistry, Martinsried, Germany.
Lional RajappaStructure and Dynamics of Molecular Machines, Max Planck Institute of Biochemistry, Martinsried, Germany.
Benjamin FosterInstitute of Functional Epigenetics (IFE), Helmholtz Zentrum München, Neuherberg, Germany.
Vanessa Borges PiresGenome Maintenance Mechanisms in Health and Disease, Institute of Genome Stability in Ageing and Disease, CECAD Research Center, University of Cologne, Cologne, Germany.
Priyanka BansalBiomedical Center Munich (BMC), Division of Molecular Biology, Faculty of Medicine, Ludwig-Maximilians-Universität in Munich, Martinsried, Germany.ORCID https://orcid.org/0000-0002-8276-5466
Erika ChacinBiomedical Center Munich (BMC), Division of Molecular Biology, Faculty of Medicine, Ludwig-Maximilians-Universität in Munich, Martinsried, Germany.
Jerôme BasquinCrystallization Facility, Max Planck Institute of Biochemistry, Martinsried, Germany.
Karl E DuderstadtStructure and Dynamics of Molecular Machines, Max Planck Institute of Biochemistry, Martinsried, Germany.
Christoph F KuratBiomedical Center Munich (BMC), Division of Molecular Biology, Faculty of Medicine, Ludwig-Maximilians-Universität in Munich, Martinsried, Germany.ORCID https://orcid.org/0000-0003-0962-3258
Till BartkeInstitute of Functional Epigenetics (IFE), Helmholtz Zentrum München, Neuherberg, Germany.
Karl-Peter HopfnerGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität, Munich, Germany.ORCID https://orcid.org/0000-0002-4528-8357
Boris PfanderDNA Replication and Genome Integrity, Max Planck Institute of Biochemistry, Martinsried, Germany bpfander@biochem.mpg.de boris.pfander@dlr.de.ORCID https://orcid.org/0000-0003-2180-5054
Max Planck Institute of Biochemistry · DELudwig-Maximilians-Universität München · DEUniversity of Cologne · DEHelmholtz Zentrum München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fun30 is the prototype of the Fun30-SMARCAD1-ETL subfamily of nucleosome remodelers involved in DNA repair and gene silencing. These proteins appear to act as single-subunit nucleosome remodelers, but their molecular mechanisms are, at this point, poorly understood. Using multiple sequence alignment and structure prediction, we identify an evolutionarily conserved domain that is modeled to contain a SAM-like fold with one long, protruding helix, which we term SAM-key. Deletion of the SAM-key within budding yeast Fun30 leads to a defect in DNA repair and gene silencing similar to that of the

Indexed as

NucleosomesSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesDNASaccharomyces cerevisiaeTranscription FactorsAdenosine TriphosphatasesDNANucleosomesSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID37468166
PMCPMC10355287
OpenAlexW4384819030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.