Evidence map›Paper›PMID 37466633›Full record

ArticleeLife2023

Integrating analog and digital modes of gene expression at

Rea L Antoniou-Kourounioti, Anis Meschichi, Svenja Reeck, Scott Berry, Govind Menon, Yusheng Zhao, John Fozard, Terri Holmes, Lihua Zhao, Huamei Wang and 4 more

Abstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Rea L Antoniou-Kourounioti *Department of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-5226-521X
Anis Meschichi *Swedish University of Agricultural Sciences, Plant Biology Department, Uppsala, Sweden.ORCID 0000-0001-8946-6023
Svenja Reeck *Department of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-6362-5310
Scott BerryEMBL Australia Node in Single Molecule Science, School of Medical Sciences, University of New South Wales, Sydney, Australia.ORCID 0000-0002-1838-4976
Govind MenonDepartment of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-1028-5463
Yusheng ZhaoState Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-5893-504X
John FozardDepartment of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-9181-8083
Terri HolmesFaculty of Medicine and Health Sciences, Norwich Medical School, University of East Anglia, Norwich, United Kingdom.ORCID 0000-0002-8480-0755
Lihua ZhaoSwedish University of Agricultural Sciences, Plant Biology Department, Uppsala, Sweden.ORCID 0000-0002-1758-9873
Huamei WangCollege of Life Sciences, Wuhan University, Wuhan, China.
Matthew HartleyEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, United Kingdom.ORCID 0000-0001-6178-2884
Caroline DeanDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-6555-3525
Stefanie RosaSwedish University of Agricultural Sciences, Plant Biology Department, Uppsala, Sweden.ORCID 0000-0002-8100-1253
Martin HowardDepartment of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-7670-0781

Funding

Biotechnology and Biological Sciences Research Council BB/P013511/1Biotechnology and Biological Sciences Research Council BB/P020380/1
6 · The paper itself

Abstract

Quantitative gene regulation at the cell population level can be achieved by two fundamentally different modes of regulation at individual gene copies. A 'digital' mode involves binary ON/OFF expression states, with population-level variation arising from the proportion of gene copies in each state, while an 'analog' mode involves graded expression levels at each gene copy. At the

Indexed as

ArabidopsisArabidopsis ProteinsCold TemperatureEpigenesis, GeneticFlowersGene ExpressionGene Expression Regulation, PlantGene SilencingMADS Domain ProteinsArabidopsis ProteinsMADS Domain ProteinsA. thalianachromosomescomputational biologyFLCgene expressionmathematical modelingquantitative gene expressionSingle molecule RNA FISHsystems biology

Identifiers

PMID37466633
PMCPMC10356135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.