Evidence map›Paper›PMID 37466446›Full record

ArticleMicrobiology spectrum2023

Short- and Long-Read Sequencing Reveals the Presence and Evolution of an IncF Plasmid Harboring

Rory Cave, Mary M Ter-Stepanyan, Hermine V Mkrtchyan

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Rory CaveSchool of Biomedical Sciences, University of West London, London, United Kingdom.
Mary M Ter-StepanyanYerevan State Medical University after M. Heratsi, Faculty of Public Health, Department of Epidemiology, Yerevan, Republic of Armenia.
Hermine V MkrtchyanSchool of Biomedical Sciences, University of West London, London, United Kingdom.ORCID 0000-0001-7339-7297
University of West London · GBResearch Center of Maternal and Child Health Protection · AM

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli sequence type 131 (ST131) has contributed to the spread of extended-spectrum beta-lactamase (ESBL) and has emerged as the dominant cause of hospital- and community-acquired urinary tract infections. Here, we report for the first time an in-depth analysis of whole-genome sequencing (WGS) of 4 ESBL-producing E. coli ST131 isolates recovered from patients in two hospitals in Armenia using Illumina short-read sequencing for accurate base calling to determine their genotype and to infer their phylogeny and using Oxford Nanopore Technologies long-read sequencing to resolve plasmid and chromosomal genetic elements. Genotypically, the four Armenian isolates were identified as part of the

Indexed as

Escherichia coli InfectionsEscherichia coli ProteinsAnti-Bacterial Agentsbeta-LactamasesEscherichia coliHumansPlasmidsAnti-Bacterial Agentsbeta-LactamasesEscherichia coli ProteinsE. coli ST131ESBL UPEChybrid assemblylong-read sequencingshort-read sequencingwhole-genome sequencing

Identifiers

PMID37466446
PMCPMC10433869
OpenAlexW4384663484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.