Evidence map›Paper›PMID 37466391›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2023

Single-Cell Analysis of CX3CR1+ Cells Reveals a Pathogenic Role for BIRC5+ Myeloid Proliferating Cells Driven by Staphylococcus aureus Leukotoxins.

Denis G Loredan, Joseph C Devlin, Keenan A Lacey, Nina Howard, Ze Chen, Erin E Zwack, Jian-Da Lin, Kelly V Ruggles, Kamal M Khanna, Victor J Torres and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Denis G LoredanDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.ORCID 0000-0001-7889-7776
Joseph C DevlinDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.
Keenan A LaceyDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.ORCID 0000-0002-9242-0170
Nina HowardLaboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-1204-5885
Ze ChenDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.
Erin E ZwackDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.
Jian-Da LinDepartment of Biochemical Science and Technology, College of Life Science, National Taiwan University, Taipei City, Taiwan.ORCID 0000-0003-3697-4766
Kelly V RugglesInstitute of Systems Genetics, New York University Grossman School of Medicine, New York, NY.ORCID 0000-0002-0152-0863
Kamal M KhannaDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.ORCID 0000-0002-9328-3817
Victor J TorresDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.ORCID 0000-0002-7126-0489
P'ng LokeDepartment of Microbiology, New York University Grossman School of Medicine, New York, NY.ORCID 0000-0002-6211-3292
New York University · USNational Institutes of Health · USNational Taiwan University of Science and Technology · TW

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
Mechanistic Studies Of The Staphylococcus aureus LukAB CytotoxinR01AI099394 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Victor J. Torres · 2013 to 2026
$6.1M
Alternatively activated macrophages during type 2 immune responsesZIAAI001256 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOKE, P'NG · 2020 to 2025
$6.1M
Regulation of mucosal immune responses by helminth infectionsZIAAI001255 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOKE, P'NG · 2020 to 2025
$6.1M
Contribution of LukED to Staphylococcus aureus pathobiologyR01AI105129 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI TORRES, VICTOR J. · 2014 to 2023
$4.9M
Training Program in Immunology and Inflammation.T32AI100853 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Susan Ruth Schwab · 2012 to 2026
$4.5M
Novel lung resident interstitial macrophage subset with distinct localization and polarizationR01AI143861 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KHANNA, KAMAL MOHAN · 2019 to 2023
$3.3M
Alternatively activated macrophages during helminth infectionR01AI133977 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TORRES, VICTOR J. · 2017 to 2021
$2.4M
Intramural NIH HHS ZIA AI001255Intramural NIH HHS ZIA AI001256NCI NIH HHS P30 CA016087NIAID NIH HHS R01 AI099394NIAID NIH HHS R01 AI105129NIAID NIH HHS R01 AI133977NIAID NIH HHS R01 AI143861NIAID NIH HHS T32 AI007180NIAID NIH HHS T32 AI100853
6 · The paper itself

Abstract

Our previous studies identified a population of stem cell-like proliferating myeloid cells within inflamed tissues that could serve as a reservoir for tissue macrophages to adopt different activation states depending on the microenvironment. By lineage-tracing cells derived from CX3CR1+ precursors in mice during infection and profiling by single-cell RNA sequencing, in this study, we identify a cluster of BIRC5+ myeloid cells that expanded in the liver during chronic infection with either the parasite Schistosoma mansoni or the bacterial pathogen Staphylococcus aureus. In the absence of tissue-damaging toxins, S. aureus infection does not elicit these BIRC5+ cells. Moreover, deletion of BIRC5 from CX3CR1-expressing cells results in improved survival during S. aureus infection. Hence the combination of single-cell RNA sequencing and genetic fate-mapping CX3CR1+ cells revealed a toxin-dependent pathogenic role for BIRC5 in myeloid cells during S. aureus infection.

Indexed as

Staphylococcal InfectionsStaphylococcus aureusAnimalsExotoxinsMiceMyeloid CellsSingle-Cell AnalysisExotoxinsleukotoxin

Identifiers

PMID37466391
PMCPMC10450158
OpenAlexW4384665243

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.