Evidence map›Paper›PMID 37465666›Full record

ArticleFrontiers in immunology2023

Prognostic and immunological significance of an M1 macrophage-related gene signature in osteosarcoma.

Xiaoyu Mao, Fanglong Song, Ju Jin, Bin Zou, Peijun Dai, Mingjuan Sun, Weicheng Xu, Lianghua Wang, Yifan Kang

Abstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiaoyu MaoDepartment of Orthopedics, Third Affiliated Hospital of Naval Medical University, Shanghai, China.
Fanglong SongDepartment of Orthopedics, The Second Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China.
Ju JinDepartment of Biochemistry and Molecular Biology, College of Basic Medical, Naval Medical University, Shanghai, China.
Bin ZouDepartment of Biochemistry and Molecular Biology, College of Basic Medical, Naval Medical University, Shanghai, China.
Peijun DaiDepartment of Orthopedics, Third Affiliated Hospital of Naval Medical University, Shanghai, China.
Mingjuan SunDepartment of Biochemistry and Molecular Biology, College of Basic Medical, Naval Medical University, Shanghai, China.
Weicheng XuDepartment of Orthopedics, The Second Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China.
Lianghua WangDepartment of Biochemistry and Molecular Biology, College of Basic Medical, Naval Medical University, Shanghai, China.
Yifan KangDepartment of Orthopedics, Third Affiliated Hospital of Naval Medical University, Shanghai, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As the most abundant infiltrating immune cells in the tumor microenvironment (TME), tumor-associated macrophages (TAMs) are pivotal in tumor development and treatment. The present investigation endeavors to explore the potential of M1 macrophage-related genes (MRGs) as biomarkers for assessing risk in individuals with osteosarcoma. RNA-sequence data and clinical data were derived from TCGA and GEO databases. The CIBERSORT method was utilized to discern subtypes of tumor-infiltrating immune cells. Identification of MRGs was achieved through Pearson correlation analysis. A prognostic risk model for MRGs was developed using Cox and LASSO regression analyses. A tripartite gene signature comprising CD37, GABRD, and ARHGAP25 was an independent prognostic indicator and was employed to develop a risk score model. The internal and external validation cohort confirmed the results. The area under the ROC curve (AUC) was determined for survival periods of 1 year, three years, and five years, yielding values of 0.746, 0.839, and 0.850, respectively. The C-index of the risk score was found to be superior to clinicopathological factors. GO/KEGG enrichment showed that the differences between high- and low-risk groups were predominantly associated with immune response pathways. Immune-related analysis related to proportions of immune cells, immune function, and expression levels of immune checkpoint genes all showed differences between the high- and low-risk groups. The qRT-PCR and Western blotting results indicate that CD37 expression was markedly higher in MG63 and U2OS cell lines when compared to normal osteoblast hFOB1.19. In U2OS cell line, GABRD expression levels were significantly upregulated. ARHGAP25 expression levels were elevated in both 143B and U2OS cell lines. In summary, utilizing a macrophage genes signature demonstrates efficacy in predicting both the prognosis and therapy response of OS. Additionally, immune analysis confirms a correlation between the risk score and the tumor microenvironment. Our findings, therefore, provide a cogent account for the disparate prognoses observed among patients and furnish a justification for further inquiry into biomarkers and anti-tumor treatment strategies.

Indexed as

Bone NeoplasmsOsteosarcomaHumansMacrophagesOsteoblastsPrognosisTumor Microenvironmentimmunotherapymacrophage-related genesosteosarcomaprognostic signaturetranscriptomics analysistumor microenvironment

Identifiers

PMID37465666
PMCPMC10350629

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.