Evidence map›Paper›PMID 37464742›Full record

ArticleBiophysical journal2023

Simulations suggest robust microtubule attachment of kinesin and dynein in antagonistic pairs.

Tzu-Chen Ma, Allison M Gicking, Qingzhou Feng, William O Hancock

Abstract read
In one paragraph

Article in Biophysical journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tzu-Chen MaDepartment of Biomedical Engineering, Pennsylvania State University, University Park, Pennsylvania.
Allison M GickingDepartment of Biomedical Engineering, Pennsylvania State University, University Park, Pennsylvania.
Qingzhou FengDepartment of Biomedical Engineering, Pennsylvania State University, University Park, Pennsylvania.
William O HancockDepartment of Biomedical Engineering, Pennsylvania State University, University Park, Pennsylvania; Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania. Electronic address: woh1@psu.edu.

Funding

Molecular mechanism of bidirectional transportR35GM139568 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI William Olaf Hancock · 2021 to 2026
$4.9M
Molecular mechanism of kinesin motilityR01GM076476 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI HANCOCK, WILLIAM OLAF · 2006 to 2019
$3.5M
Bridging Understanding of Motor-Cargo Transport from Artificial to Cellular SystemsR01GM122082 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FRICKS, JOHN · 2016 to 2019
$1.6M
Mechanics Underlying Dynein-Kinesin Bidirectional Intracellular TransportF32GM137487 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI GICKING, ALLISON · 2020 to 2021
$131k
NIGMS NIH HHS F32 GM137487NIGMS NIH HHS R01 GM076476NIGMS NIH HHS R01 GM122082NIGMS NIH HHS R35 GM139568
6 · The paper itself

Abstract

Intracellular transport is propelled by kinesin and cytoplasmic dynein motors that carry membrane-bound vesicles and organelles bidirectionally along microtubule tracks. Much is known about these motors at the molecular scale, but many questions remain regarding how kinesin and dynein cooperate and compete during bidirectional cargo transport at the cellular level. The goal of the present study was to use a stochastic stepping model constructed by using published load-dependent properties of kinesin-1 and dynein-dynactin-BicD2 (DDB) to identify specific motor properties that determine the speed, directionality, and transport dynamics of a cargo carried by one kinesin and one dynein motor. Model performance was evaluated by comparing simulations to recently published experiments of kinesin-DDB pairs connected by complementary oligonucleotide linkers. Plotting the instantaneous velocity distributions from kinesin-DDB experiments revealed a single peak centered around zero velocity. In contrast, velocity distributions from simulations displayed a central peak around 100 nm/s, along with two side peaks corresponding to the unloaded kinesin and DDB velocities. We hypothesized that frequent motor detachment events and relatively slow motor reattachment rates resulted in periods in which only one motor is attached. To investigate this hypothesis, we varied specific model parameters and compared the resulting instantaneous velocity distributions, and we confirmed this systematic investigation using a machine-learning approach that minimized the residual sum of squares between the experimental and simulation velocity distributions. The experimental data were best recapitulated by a model in which the kinesin and dynein stall forces are matched, the motor detachment rates are independent of load, and the kinesin-1 reattachment rate is 50 s

Indexed as

DyneinsKinesinsBiological TransportDynactin ComplexHydrocarbons, ChlorinatedMicrotubulesDDBDynactin ComplexDyneinsHydrocarbons, ChlorinatedKinesins

Identifiers

PMID37464742
PMCPMC10465704

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.