Evidence map›Paper›PMID 37463979›Full record

ArticleScientific reports2023

Insights into peculiar fungal LPMO family members holding a short C-terminal sequence reminiscent of phosphate binding motifs.

Jean-Lou Reyre, Sacha Grisel, Mireille Haon, Ruite Xiang, Jean-Charles Gaillard, Jean Armengaud, Victor Guallar, Antoine Margeot, Simon Arragain, Jean-Guy Berrin and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jean-Lou ReyreUMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, 13009, Marseille, France.
Sacha GriselUMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, 13009, Marseille, France.
Mireille HaonUMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, 13009, Marseille, France.
Ruite XiangBarcelona Supercomputing Center, Plaça Eusebi Güell, 1-3, 08034, Barcelona, Spain.
Jean-Charles GaillardDépartement Médicaments et Technologies pour la Santé (DMTS), SPI, Université Paris-Saclay, CEA, INRAE, 30200, Bagnols-Sur-Cèze, France.
Jean ArmengaudDépartement Médicaments et Technologies pour la Santé (DMTS), SPI, Université Paris-Saclay, CEA, INRAE, 30200, Bagnols-Sur-Cèze, France.
Victor GuallarBarcelona Supercomputing Center, Plaça Eusebi Güell, 1-3, 08034, Barcelona, Spain.
Antoine MargeotIFP Energies nouvelles, 1 et 4 avenue de Bois-Préau, 92852, Rueil-Malmaison, France.
Simon ArragainIFP Energies nouvelles, 1 et 4 avenue de Bois-Préau, 92852, Rueil-Malmaison, France.
Jean-Guy BerrinUMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, 13009, Marseille, France. jean-guy.berrin@inrae.fr.
Bastien BissaroUMR1163 Biodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, 13009, Marseille, France. bastien.bissaro@inrae.fr.
Biodiversité et Biotechnologie Fongiques · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRBarcelona Supercomputing Center · ESIFP Énergies nouvelles · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lytic polysaccharide monooxygenases (LPMOs) are taxonomically widespread copper-enzymes boosting biopolymers conversion (e.g. cellulose, chitin) in Nature. White-rot Polyporales, which are major fungal wood decayers, may possess up to 60 LPMO-encoding genes belonging to the auxiliary activities family 9 (AA9). Yet, the functional relevance of such multiplicity remains to be uncovered. Previous comparative transcriptomic studies of six Polyporales fungi grown on cellulosic substrates had shown the overexpression of numerous AA9-encoding genes, including some holding a C-terminal domain of unknown function ("X282"). Here, after carrying out structural predictions and phylogenetic analyses, we selected and characterized six AA9-X282s with different C-term modularities and atypical features hitherto unreported. Unexpectedly, after screening a large array of conditions, these AA9-X282s showed only weak binding properties to cellulose, and low to no cellulolytic oxidative activity. Strikingly, proteomic analysis revealed the presence of multiple phosphorylated residues at the surface of these AA9-X282s, including a conserved residue next to the copper site. Further analyses focusing on a 9 residues glycine-rich C-term extension suggested that it could hold phosphate-binding properties. Our results question the involvement of these AA9 proteins in the degradation of plant cell wall and open new avenues as to the divergence of function of some AA9 members.

Indexed as

BasidiomycotaCopperCelluloseFungal ProteinsPhosphatesPhylogenyPolysaccharidesProteomicsCelluloseCopperFungal ProteinsPhosphatesPolysaccharides

Identifiers

PMID37463979
PMCPMC10354095
OpenAlexW4384641326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.