Evidence map›Paper›PMID 37463880›Full record

ArticleNature communications2023

Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters.

Marie Louis, Petra Korlević, Milaja Nykänen, Frederick Archer, Simon Berrow, Andrew Brownlow, Eline D Lorenzen, Joanne O'Brien, Klaas Post, Fernando Racimo and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Ancient DNA suggests a historical demographic decline and genetic erosion in the Atlantic bluefin tuna.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Marie Louis *Centre for Biological Diversity, Sir Harold Mitchell Building and Dyers Brae, University of St Andrews, St Andrews, KY16 9TH, Scotland, UK. marielouis17@hotmail.com.ORCID 0000-0002-4611-5503
Petra Korlević *Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103, Leipzig, Germany.ORCID 0000-0002-5418-5587
Milaja Nykänen *Department of Environmental and Biological Sciences, PO Box 111, FI-80101, Joensuu, Finland.
Frederick ArcherMarine Mammal and Turtle Division, Southwest Fisheries Science Center, NOAA, 8901 La Jolla Shores Drive, La Jolla, CA, 92037, USA.ORCID 0000-0002-3179-4769
Simon BerrowIrish Whale and Dolphin Group, Kilrush, Co Clare, Ireland.
Andrew BrownlowScottish Marine Animal Stranding Scheme, Institute of Biodiversity, Animal Health & Comparative Medicine College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, UK.ORCID 0000-0001-9885-7480
Eline D LorenzenGlobe Institute, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen K, Denmark.
Joanne O'BrienIrish Whale and Dolphin Group, Kilrush, Co Clare, Ireland.
Klaas PostNatural History Museum Rotterdam, Westzeedijk 345, 3015 AA, Rotterdam, Netherlands.
Fernando RacimoGlobe Institute, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen K, Denmark.
Emer RoganSchool of Biological, Earth and Environmental Sciences, University College Cork, North Mall, Cork, Ireland.
Patricia E RoselMarine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA, 646 Cajundome Boulevard, Lafayette, LA, 70506, USA.ORCID 0000-0002-6481-3989
Mikkel-Holger S SindingDepartment of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.ORCID 0000-0003-1371-219X
Henry van der EsNatural History Museum Rotterdam, Westzeedijk 345, 3015 AA, Rotterdam, Netherlands.
Nathan WalesUniversity of York, BioArCh, Environment Building, Wentworth Way, Heslington, York, YO10 5DD, UK.ORCID 0000-0003-0359-8450
Michael C FontaineGroningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, PO Box 11103 CC, Groningen, The Netherlands.ORCID 0000-0003-1156-4154
Oscar E GaggiottiCentre for Biological Diversity, Sir Harold Mitchell Building and Dyers Brae, University of St Andrews, St Andrews, KY16 9TH, Scotland, UK.ORCID 0000-0003-1827-1493
Andrew D FooteDepartment of Natural History, Norwegian University of Science and Technology (NTNU), NO-7491, Trondheim, Norway. andrew.foote@ntnu.no.ORCID 0000-0001-7384-1634

Funding

Wellcome Trust
6 · The paper itself

Abstract

Parallel evolution provides strong evidence of adaptation by natural selection due to local environmental variation. Yet, the chronology, and mode of the process of parallel evolution remains debated. Here, we harness the temporal resolution of paleogenomics to address these long-standing questions, by comparing genomes originating from the mid-Holocene (8610-5626 years before present, BP) to contemporary pairs of coastal-pelagic ecotypes of bottlenose dolphin. We find that the affinity of ancient samples to coastal populations increases as the age of the samples decreases. We assess the youngest genome (5626 years BP) at sites previously inferred to be under parallel selection to coastal habitats and find it contained coastal-associated genotypes. Thus, coastal-associated variants rose to detectable frequencies close to the emergence of coastal habitat. Admixture graph analyses reveal a reticulate evolutionary history between pelagic and coastal populations, sharing standing genetic variation that facilitated rapid adaptation to newly emerged coastal habitats.

Indexed as

Bottle-Nosed DolphinGenetics, PopulationAnimalsEcosystemGenomicsPaleontology

Identifiers

PMID37463880
PMCPMC10354069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.