Evidence map›Paper›PMID 37463472›Full record

ArticleACS synthetic biology2023

Theory for High-Throughput Genetic Interaction Screening.

Madeline E McCarthy, William B Dodd, Xiaoming Lu, Daniel J Pritko, Nishi D Patel, Charlotte V Haskell, Hugo Sanabria, Mark A Blenner, Marc R Birtwistle

Open access · greenAbstract read
In one paragraph

Article in ACS synthetic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Madeline E McCarthyDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.ORCID 0000-0002-6367-0461
William B DoddDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.
Xiaoming LuDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.
Daniel J PritkoDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.
Nishi D PatelDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.
Charlotte V HaskellDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.
Hugo SanabriaDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina 29631, United States.ORCID 0000-0001-7068-6827
Mark A BlennerDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.ORCID 0000-0001-9274-3749
Marc R BirtwistleDepartment of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29631, United States.ORCID 0000-0002-0341-0705
Clemson University · US

Funding

Mechanistic Pharmacodynamic Modeling for Drug Combination ResponsesR35GM141891 · NIGMS · CLEMSON UNIVERSITY · PI BIRTWISTLE, MARC R. · 2021 to 2025
$2.1M
Multiplexed, Quantitative Fluorescence Imaging in Tumor SectionsR21CA196418 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BIRTWISTLE, MARC R. · 2015 to 2017
$936k
NCI NIH HHS R21 CA196418NIGMS NIH HHS R35 GM141891
6 · The paper itself

Abstract

Systematic, genome-scale genetic screens have been instrumental for elucidating genotype-phenotype relationships, but approaches for probing genetic interactions have been limited to at most ∼100 pre-selected gene combinations in mammalian cells. Here, we introduce a theory for high-throughput genetic interaction screens. The theory extends our recently developed Multiplexing using Spectral Imaging and Combinatorics (MuSIC) approach to propose ∼10

Indexed as

High-Throughput Screening AssaysMammalsAnimalsCloning, MolecularHumansbarcodesfluorescencegenetic interaction screeninggenetic screeningsimulationsspectral flow cytometry

Identifiers

PMID37463472
PMCPMC10443530
OpenAlexW4384664267

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.