Evidence map›Paper›PMID 37463141›Full record

ArticlePLoS biology2023

Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns.

Lukas Baumgarten, Bjorn Pieper, Baoxing Song, Sébastien Mane, Janne Lempe, Jonathan Lamb, Elizabeth L Cooke, Rachita Srivastava, Stefan Strütt, Danijela Žanko and 15 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Polyploid genome assembly ofGigaByte (Hong Kong, China) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 7 institutions in 4 countries.

Lukas BaumgartenDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Bjorn PieperDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Baoxing SongDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Sébastien ManeDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Janne LempeDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Jonathan LambDepartment of Biology, University of Oxford, Oxford, United Kingdom.
Elizabeth L CookeDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Rachita SrivastavaDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Stefan StrüttDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Danijela ŽankoDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Pedro Gp CasimiroJardim Botânico do Faial, Azores, Portugal.
Asis HallabDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Maria CartolanoDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Alexander D TattersallDepartment of Biology, University of Oxford, Oxford, United Kingdom.
Bruno HuettelMax Planck Genome Centre Cologne, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Dmitry A FilatovDepartment of Biology, University of Oxford, Oxford, United Kingdom.
Pavlos PavlidisInstitute of Computer Science, Foundation for Research and Technology, Crete, Greece.
Barbara NeufferDepartment of Botany, University of Osnabrück, Osnabrück, Germany.
Christos BazakosDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Hanno SchaeferDepartment Life Science Systems, School of Life Sciences, Technical University of Munich, Freising, Germany.
Richard MottDepartment of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Xiangchao GanDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Carlos Alonso-BlancoDepartment of Plant Molecular Genetics, Centro Nacional de Biotecnología (CNB), Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain.
Stefan LaurentDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Miltos TsiantisDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.ORCID 0000-0001-7150-1855
Max Planck Institute for Plant Breeding Research · DEUniversity of Oxford · GBConsejo Superior de Investigaciones Científicas · ESFoundation for Research and Technology Hellas · GROsnabrück University · DETechnical University of Munich · DEUniversity College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/D010977/1Medical Research Council G0900747Medical Research Council G0900747 91070Wellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

We study natural DNA polymorphisms and associated phenotypes in the Arabidopsis relative Cardamine hirsuta. We observed strong genetic differentiation among several ancestry groups and broader distribution of Iberian relict strains in European C. hirsuta compared to Arabidopsis. We found synchronization between vegetative and reproductive development and a pervasive role for heterochronic pathways in shaping C. hirsuta natural variation. A single, fast-cycling ChFRIGIDA allele evolved adaptively allowing range expansion from glacial refugia, unlike Arabidopsis where multiple FRIGIDA haplotypes were involved. The Azores islands, where Arabidopsis is scarce, are a hotspot for C. hirsuta diversity. We identified a quantitative trait locus (QTL) in the heterochronic SPL9 transcription factor as a determinant of an Azorean morphotype. This QTL shows evidence for positive selection, and its distribution mirrors a climate gradient that broadly shaped the Azorean flora. Overall, we establish a framework to explore how the interplay of adaptation, demography, and development shaped diversity patterns of 2 related plant species.

Indexed as

ArabidopsisCardamineDemographyGenotypePhenotype

Identifiers

PMID37463141
PMCPMC10353826
OpenAlexW4384662942

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.