Evidence map›Paper›PMID 37463047›Full record

ArticleThe Journal of clinical investigation2023

SF3B1 mutation and ATM deletion codrive leukemogenesis via centromeric R-loop dysregulation.

Martina Cusan, Haifeng Shen, Bo Zhang, Aijun Liao, Lu Yang, Meiling Jin, Mike Fernandez, Prajish Iyer, Yiming Wu, Kevyn Hart and 9 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. RNA splicing in health and disease.Molecular biomedicine · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Martina CusanDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Haifeng ShenDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Bo ZhangDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Aijun LiaoDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Lu YangDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Meiling JinDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Mike FernandezDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Prajish IyerDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Yiming WuDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Kevyn HartDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
Catherine GutierrezDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Sara NikGottesman Institute for Stem Cell Biology and Regenerative Medicine and.
Shondra M Pruett-MillerDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jeremy StarkDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute of the City of Hope, Duarte, California, USA.
Esther A ObengDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Teresa V BowmanGottesman Institute for Stem Cell Biology and Regenerative Medicine and.
Catherine J WuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Ren-Jang LinCenter for RNA Biology and Therapeutics, Beckman Research Institute of the City of Hope, Duarte, California, USA.
Lili WangDepartment of Systems Biology, Beckman Research Institute of the City of Hope, Monrovia, California, USA.
City of Hope · USAlbert Einstein College of Medicine · USCity Of Hope National Medical Center · USDana-Farber Cancer Institute · USSt. Jude Children's Research Hospital · USUnion Hospital · CN

Funding

(PQ8) Genetically faithful murine models for studying disease progression in chronic lymphocytic leukemiaR01CA216273 · NCI · DANA-FARBER CANCER INST · PI WANG, LILI, WU, CATHERINE JU-YING · 2017 to 2021
$3.5M
Cooperation of SF3B1 mutations and ATM deletions in the pathogenesis of chronic lymphocytic leukemiaR01CA240910 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI WANG, LILI · 2020 to 2024
$2.1M
Crosstalk of Splicing and Signaling in HSPC fate choicesR01DK121738 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BOWMAN, TERESA V · 2020 to 2023
$1.6M
NCI NIH HHS R01 CA216273NCI NIH HHS R01 CA240910NIDDK NIH HHS R01 DK121738
6 · The paper itself

Abstract

RNA splicing factor SF3B1 is recurrently mutated in various cancers, particularly in hematologic malignancies. We previously reported that coexpression of Sf3b1 mutation and Atm deletion in B cells, but not either lesion alone, leads to the onset of chronic lymphocytic leukemia (CLL) with CLL cells harboring chromosome amplification. However, the exact role of Sf3b1 mutation and Atm deletion in chromosomal instability (CIN) remains unclear. Here, we demonstrated that SF3B1 mutation promotes centromeric R-loop (cen-R-loop) accumulation, leading to increased chromosome oscillation, impaired chromosome segregation, altered spindle architecture, and aneuploidy, which could be alleviated by removal of cen-R-loop and exaggerated by deletion of ATM. Aberrant splicing of key genes involved in R-loop processing underlay augmentation of cen-R-loop, as overexpression of the normal isoform, but not the altered form, mitigated mitotic stress in SF3B1-mutant cells. Our study identifies a critical role of splice variants in linking RNA splicing dysregulation and CIN and highlights cen-R-loop augmentation as a key mechanism for leukemogenesis.

Indexed as

Leukemia, Lymphocytic, Chronic, B-CellAtaxia Telangiectasia Mutated ProteinsHumansMutationPhosphoproteinsR-Loop StructuresRNA Splicing FactorsAtaxia Telangiectasia Mutated ProteinsATM protein, humanPhosphoproteinsRNA Splicing FactorsSF3B1 protein, humanCancerDNA repairOncology

Identifiers

PMID37463047
PMCPMC10471171
OpenAlexW4384627178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.