Evidence map›Paper›PMID 37459509›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

In vivo versus in silico assessment of potentially pathogenic missense variants in human reproductive genes.

Xinbao Ding, Priti Singh, Kerry Schimenti, Tina N Tran, Robert Fragoza, Jimmaline Hardy, Kyle E Orwig, Marta Olszewska, Maciej K Kurpisz, Alexander N Yatsenko and 3 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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  8. Review
  9. Maternal genetic variants in kinesin motor domains prematurely increase egg aneuploidy.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Xinbao DingCollege of Veterinary Medicine, Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853.ORCID 0000-0001-5941-4898
Priti SinghCollege of Veterinary Medicine, Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853.
Kerry SchimentiCollege of Veterinary Medicine, Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853.
Tina N TranCollege of Veterinary Medicine, Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853.
Robert FragozaDepartment of Computational Biology, Cornell University, Ithaca, NY 14853.
Jimmaline HardySchool of Medicine, Department of Obstetrics, Gynecology, and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA 15213.
Kyle E OrwigSchool of Medicine, Department of Obstetrics, Gynecology, and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA 15213.ORCID 0000-0002-7952-8419
Marta OlszewskaInstitute of Human Genetics, Polish Academy of Sciences, Poznan 60-479, Poland.ORCID 0000-0002-2337-4545
Maciej K KurpiszInstitute of Human Genetics, Polish Academy of Sciences, Poznan 60-479, Poland.ORCID 0000-0003-3275-3245
Alexander N YatsenkoSchool of Medicine, Department of Obstetrics, Gynecology, and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA 15213.
Donald F ConradOregon Health & Science University, Division of Genetics, Oregon National Primate Research Center, Beaverton, OR 97006.ORCID 0000-0003-3828-8970
Haiyuan YuDepartment of Computational Biology, Cornell University, Ithaca, NY 14853.ORCID 0000-0001-7597-6049
John C SchimentiCollege of Veterinary Medicine, Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-7294-1876
Cornell University · USUniversity of Pittsburgh · USInstitute of Human Genetics · PLOregon National Primate Research Center · US

Funding

Project IIIP50HD096723 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI John C Schimenti · 2019 to 2026
$15.0M
Identification and Functional Validation of Human Infertility AllelesR01HD082568 · NICHD · CORNELL UNIVERSITY · PI SCHIMENTI, JOHN C · 2015 to 2024
$6.0M
NICHD NIH HHS P50 HD096723NICHD NIH HHS R01 HD082568
6 · The paper itself

Abstract

Infertility is a heterogeneous condition, with genetic causes thought to underlie a substantial fraction of cases. Genome sequencing is becoming increasingly important for genetic diagnosis of diseases including idiopathic infertility; however, most rare or minor alleles identified in patients are variants of uncertain significance (VUS). Interpreting the functional impacts of VUS is challenging but profoundly important for clinical management and genetic counseling. To determine the consequences of these variants in key fertility genes, we functionally evaluated 11 missense variants in the genes

Indexed as

Infertility, MaleMutation, MissenseAllelesAnimalsDisease Models, AnimalHumansMaleMiceReproductionSeptinsSEPT12 protein, mouseSeptinsCRISPR/Cas9infertilitymeiosispathogenicity prediction algorithmsvariants of uncertain significance

Identifiers

PMID37459509
PMCPMC10372637
OpenAlexW4384498470

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.