Evidence map›Paper›PMID 37458041›Full record

ArticleJournal of Alzheimer's disease : JAD2023

The APOE-TOMM40 Humanized Mouse Model: Characterization of Age, Sex, and PolyT Variant Effects on Gene Expression.

William K Gottschalk, Scott Mahon, Dellila Hodgson, Julio Barrera, Delaney Hill, Angela Wei, Manish Kumar, Kathy Dai, Lauren Anderson, Mirta Mihovilovic and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of Alzheimer's disease : JAD, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Alzheimer's & dementia (Amsterdam, Netherlands)
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

William K GottschalkDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Scott MahonDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Dellila HodgsonDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Julio BarreraDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Delaney HillCenter for Genomic and Computational Biology, Duke University Medical Center, Durham, NC, USA.
Angela WeiDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Manish KumarDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Kathy DaiDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Lauren AndersonDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Mirta MihovilovicDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Michael W LutzDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Ornit Chiba-FalekDivision of Translational Brain Sciences, Department of Neurology, Duke University Medical Center, Durham, NC, USA.
Duke University Hospital · USDuke Medical Center · USDuke University · US

Funding

Deciphering the regulation of gene expression in the etiology of LOADR01AG057522 · NIA · DUKE UNIVERSITY · PI CHIBA-FALEK, ORNIT, LUTZ, MICHAEL WILLIAM · 2017 to 2021
$3.6M
Untangling the diversity in the genetic architecture of late-onset Alzheimer's disease using single cell multi-omicsRF1AG077695 · NIA · DUKE UNIVERSITY · PI CHIBA-FALEK, ORNIT · 2022 to 2022
$2.3M
Role of the TOMM40 poly-T variant in the pathogenesis of Alzheimer's diseaseR01AG040370 · NIA · DUKE UNIVERSITY · PI CHIBA-FALEK, ORNIT · 2013 to 2017
$2.2M
Summer Scholars Program in Genome Sciences and MedicineR25HG009644 · NHGRI · DUKE UNIVERSITY · PI HAGA, SUSANNE, WRAY, GREGORY A. · 2017 to 2024
$1.2M
NHGRI NIH HHS R25 HG009644NIA NIH HHS R01 AG040370NIA NIH HHS R01 AG057522NIA NIH HHS RF1 AG077695
6 · The paper itself

Abstract

backgroundThe human chromosome 19q13.32 is a gene rich region and has been associated with multiple phenotypes, including late onset Alzheimer's disease (LOAD) and other age-related conditions.

objectiveHere we developed the first humanized mouse model that contains the entire TOMM40 and APOE genes with all intronic and intergenic sequences including the upstream and downstream regions. Thus, the mouse model carries the human TOMM40 and APOE genes and their intact regulatory sequences.

methodsWe generated the APOE-TOMM40 humanized mouse model in which the entire mouse region was replaced with the human (h)APOE-TOMM40 loci including their upstream and downstream flanking regulatory sequences using recombineering technologies. We then measured the expression of the human TOMM40 and APOE genes in the mice brain, liver, and spleen tissues using TaqMan based mRNA expression assays.

resultsWe investigated the effects of the '523' polyT genotype (S/S or VL/VL), sex, and age on the human TOMM40- and APOE-mRNAs expression levels using our new humanized mouse model. The analysis revealed tissue specific and shared effects of the '523' polyT genotype, sex, and age on the regulation of the human TOMM40 and APOE genes. Noteworthy, the regulatory effect of the '523' polyT genotype was observed for all studied organs.

conclusionThe model offers new opportunities for basic science, translational, and preclinical drug discovery studies focused on the APOE genomic region in relation to LOAD and other conditions in adulthood.

Indexed as

Alzheimer DiseaseApolipoproteins EAnimalsGene ExpressionGenetic Predisposition to DiseaseGenotypeHumansIntronsMiceMitochondrial Precursor Protein Import Complex ProteinsPhenotypeApolipoproteins EMitochondrial Precursor Protein Import Complex ProteinsTOMM40 protein, humanAgeAlzheimer’s diseaseAlzheimer’s mouse modelAPOEgene expressionsexTOMM40

Identifiers

PMID37458041
PMCPMC10733864
OpenAlexW4384338483

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.