Evidence map›Paper›PMID 37455654›Full record

ArticleJournal of cell science2023

Targeted volume correlative light and electron microscopy of an environmental marine microorganism.

Karel Mocaer, Giulia Mizzon, Manuel Gunkel, Aliaksandr Halavatyi, Anna Steyer, Viola Oorschot, Martin Schorb, Charlotte Le Kieffre, Daniel P Yee, Fabien Chevalier and 4 more

Abstract read
In one paragraph

Article in Journal of cell science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Diel remodeling and cellular integration of the nitroplast.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Karel MocaerCell Biology and Biophysics Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Giulia MizzonElectron Microscopy Core Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Manuel GunkelAdvanced Light Microscopy Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Aliaksandr HalavatyiAdvanced Light Microscopy Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.ORCID 0000-0002-9002-457X
Anna SteyerEMBL Imaging Centre, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.ORCID 0000-0002-4814-7517
Viola OorschotElectron Microscopy Core Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.ORCID 0000-0002-8122-8271
Martin SchorbElectron Microscopy Core Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.ORCID 0000-0003-4910-1868
Charlotte Le KieffreUniversité Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, 38054 Grenoble, France.
Daniel P YeeUniversité Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, 38054 Grenoble, France.
Fabien ChevalierUniversité Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, 38054 Grenoble, France.
Benoit GalletInstitut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, 38000 Grenoble, France.ORCID 0000-0001-8758-7681
Johan DecelleUniversité Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, 38054 Grenoble, France.
Yannick SchwabCell Biology and Biophysics Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.ORCID 0000-0001-8027-1836
Paolo RonchiElectron Microscopy Core Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.ORCID 0000-0001-9010-533X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosynthetic microalgae are responsible for an important fraction of CO2 fixation and O2 production on Earth. Three-dimensional (3D) ultrastructural characterization of these organisms in their natural environment can contribute to a deeper understanding of their cell biology. However, the low throughput of volume electron microscopy (vEM) methods along with the complexity and heterogeneity of environmental samples pose great technical challenges. In the present study, we used a workflow based on a specific electron microscopy sample preparation method compatible with both light and vEM imaging in order to target one cell among a complex natural community. This method revealed the 3D subcellular landscape of a photosynthetic dinoflagellate, which we identified as Ensiculifera tyrrhenica, with quantitative characterization of multiple organelles. We show that this cell contains a single convoluted chloroplast and show the arrangement of the flagellar apparatus with its associated photosensitive elements. Moreover, we observed partial chromatin unfolding, potentially associated with transcription activity in these organisms, in which chromosomes are permanently condensed. Together with providing insights in dinoflagellate biology, this proof-of-principle study illustrates an efficient tool for the targeted ultrastructural analysis of environmental microorganisms in heterogeneous mixes.

Indexed as

Imaging, Three-DimensionalMicroscopy, Electron, ScanningCorrelative light and electron microscopyDinoflagellateEnvironmental sampleFocused ion beam-scanning electron microscopyPlanktonVolume electron microscopy

Identifiers

PMID37455654
PMCPMC10445747

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.