Evidence map›Paper›PMID 37453416›Full record

ArticleStructure (London, England : 1993)2023

Eye lens β-crystallins are predicted by native ion mobility-mass spectrometry and computations to form compact higher-ordered heterooligomers.

Amber D Rolland, Takumi Takata, Micah T Donor, Kirsten J Lampi, James S Prell

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Amber D RollandDepartment of Chemistry and Biochemistry, 1253 University of Oregon, Eugene, OR 97403-1253, USA.
Takumi TakataKyoto University, Research Reactor Institute 2, Asashiro-Nishi, Kumatori-cho, Sennan-gun, Osaka 590-0494, Japan.
Micah T DonorDepartment of Biological & Molecular Sciences, George Fox University, 414 N Meridian St, Newberg, OR 97132, USA.
Kirsten J LampiIntegrative Biosciences, School of Dentistry, 3181 SW Sam Jackson Park Road, Oregon Health & Science University, Portland, OR 97239-3098, USA. Electronic address: lampik@ohsu.edu.
James S PrellDepartment of Chemistry and Biochemistry, 1253 University of Oregon, Eugene, OR 97403-1253, USA; Materials Science Institute, 1252 University of Oregon, Eugene, OR 97403-1252, USA. Electronic address: jprell@uoregon.edu.
George Fox University · USKyoto University Research Reactor Institute · JPOregon Health & Science University · USOregon Research Institute · USUniversity of Oregon · US

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Aggregation of Deamidated Crystallins as a Major Cause of CataractsR01EY027012 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 2016 to 2024
$1.9M
Quantitative Determination of High-Order Protein Structure with Native Ion Mobility-Mass Spectrometry and Computational ChemistryR01GM144507 · NIGMS · UNIVERSITY OF OREGON · PI James Stephen Prell · 2022 to 2026
$1.2M
Mass Spectrometry Analysis of Lipid-Protein Interactions and Structural Heterogeneity in the Anthrax Toxin PoreR21AI125804 · NIAID · UNIVERSITY OF OREGON · PI PRELL, JAMES STEPHEN · 2017 to 2018
$424k
NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY027012NIAID NIH HHS R21 AI125804NIGMS NIH HHS R01 GM144507NIGMS NIH HHS T32 GM007759
6 · The paper itself

Abstract

Eye lens α- and β-/γ-crystallin proteins are not replaced after fiber cell denucleation and maintain lens transparency and refractive properties. The exceptionally high (∼400-500 mg/mL) concentration of crystallins in mature lens tissue and multiple other factors impede precise characterization of β-crystallin interactions, oligomer composition, size, and topology. Native ion mobility-mass spectrometry is used here to probe β-crystallin association and provide insight into homo- and heterooligomerization kinetics for these proteins. These experiments include separation and characterization of higher-order β-crystallin oligomers and illustrate the unique advantages of native IM-MS. Recombinantly expressed βB1, βB2, and βA3 isoforms are found to have different homodimerization propensities, and only βA3 forms larger homooligomers. Heterodimerization of βB2 with βA3 occurs ∼3 times as fast as that of βB1 with βA3, and βB1 and βB2 heterodimerize less readily. Ion mobility experiments, molecular dynamics simulations, and PISA analysis together reveal that observed oligomers are consistent with predominantly compact, ring-like topologies.

Indexed as

gamma-CrystallinsLens, Crystallinebeta-CrystallinsDimerizationMass Spectrometrybeta-Crystallinsgamma-Crystallinscrystallindimerization kineticseye lensnative ion mobility-mass spectrometry

Identifiers

PMID37453416
PMCPMC10528727
OpenAlexW4384344033

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.