Evidence map›Paper›PMID 37452161›Full record

ArticleScientific reports2023

Learning models for classifying Raman spectra of genomic DNA from tumor subtypes.

Giacomo Lancia, Claudio Durastanti, Cristian Spitoni, Ilaria De Benedictis, Antonio Sciortino, Emilio N M Cirillo, Mario Ledda, Antonella Lisi, Annalisa Convertino, Valentina Mussi

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Giacomo LanciaMathematical Institute, Utrecht University, Budapestlaan 6, 3584 CD, Utrecht, The Netherlands.
Claudio DurastantiDepartment of Basic and Applied Sciences for Engineering, Sapienza University of Rome, via A. Scarpa 16, 00161, Rome, Italy. claudio.durastanti@uniroma1.it.
Cristian SpitoniMathematical Institute, Utrecht University, Budapestlaan 6, 3584 CD, Utrecht, The Netherlands.
Ilaria De BenedictisDepartment of Basic and Applied Sciences for Engineering, Sapienza University of Rome, via A. Scarpa 16, 00161, Rome, Italy.
Antonio SciortinoInstitute for Microelectronics and Microsystems, CNR, via del Fosso del Cavaliere, 100, Rome, Italy.
Emilio N M CirilloDepartment of Basic and Applied Sciences for Engineering, Sapienza University of Rome, via A. Scarpa 16, 00161, Rome, Italy.
Mario LeddaInstitute of Translational Pharmacology, CNR, via del Fosso del Cavaliere, 100, Rome, Italy.
Antonella LisiInstitute of Translational Pharmacology, CNR, via del Fosso del Cavaliere, 100, Rome, Italy.
Annalisa ConvertinoInstitute for Microelectronics and Microsystems, CNR, via del Fosso del Cavaliere, 100, Rome, Italy.
Valentina MussiInstitute for Microelectronics and Microsystems, CNR, via del Fosso del Cavaliere, 100, Rome, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An early and accurate detection of different subtypes of tumors is crucial for an effective guidance to personalized therapy and in predicting the ability of tumor to metastasize. Here we exploit the Surface Enhanced Raman Scattering (SERS) platform, based on disordered silver coated silicon nanowires (Ag/SiNWs), to efficiently discriminate genomic DNA of different subtypes of melanoma and colon tumors. The diagnostic information is obtained by performing label free Raman maps of the dried drops of DNA solutions onto the Ag/NWs mat and leveraging the classification ability of learning models to reveal the specific and distinct physico-chemical interaction of tumor DNA molecules with the Ag/NW, here supposed to be partly caused by a different DNA methylation degree.

Indexed as

NanowiresNeoplasmsDNAGenomicsHumansSpectrum Analysis, RamanDNA

Identifiers

PMID37452161
PMCPMC10349119

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.