Evidence map›Paper›PMID 37452045›Full record

ArticleNature communications2023

Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A.

Chih-Wei Chen, Nadja Leimer, Egor A Syroegin, Clémence Dunand, Zackery P Bulman, Kim Lewis, Yury S Polikanov, Maxim S Svetlov

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  8. Antibiotic-Induced Bacterial Cell Death: A "Radical" Way of Dying?Current topics in microbiology and immunology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Chih-Wei ChenDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Nadja LeimerDepartment of Biology, Northeastern University, Boston, MA, 02115, USA.ORCID 0000-0002-5355-2197
Egor A SyroeginDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Clémence DunandCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Zackery P BulmanDepartment of Pharmacy Practice, University of Illinois at Chicago, Chicago, IL, 60612, USA.ORCID 0000-0002-5396-911X
Kim LewisDepartment of Biology, Northeastern University, Boston, MA, 02115, USA.
Yury S PolikanovDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA. yuryp@uic.edu.ORCID 0000-0002-5064-0327
Maxim S SvetlovCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA. msvet2@uic.edu.ORCID 0000-0003-1459-5685
University of Illinois Chicago · USNortheastern University · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Development and Field Testing of a Novel Reservoir Targeted Antibiotic Against Borrelia burgdorferiR01AI152210 · NIAID · TUFTS UNIVERSITY BOSTON · PI HU, LINDEN T, LEWIS, KIM · 2020 to 2025
$3.9M
Advancing ribosome-targeting antibacterial peptides with a unique mechanism of actionR01AI162961 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN, Terry William Moore · 2022 to 2026
$3.3M
Precise Combination Strategies Targeting Carbapenem-Resistant Klebsiella pneumoniaeR01AI173064 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Zackery P. Bulman · 2023 to 2026
$3.0M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Molecular mechanisms of action of ribosome-targeting antibiotics.R01GM132302 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI POLIKANOV, YURY · 2019 to 2022
$1.3M
Structural basis of Erm-mediated macrolide resistanceR21AI137584 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, POLIKANOV, YURY · 2018 to 2019
$440k
NIAID NIH HHS R01 AI152210NIAID NIH HHS R01 AI162961NIAID NIH HHS R01 AI173064NIAID NIH HHS R21 AI137584NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM132302NIH HHS S10 OD021527
6 · The paper itself

Abstract

The ever-growing rise of antibiotic resistance among bacterial pathogens is one of the top healthcare threats today. Although combination antibiotic therapies represent a potential approach to more efficiently combat infections caused by susceptible and drug-resistant bacteria, only a few known drug pairs exhibit synergy/cooperativity in killing bacteria. Here, we discover that well-known ribosomal antibiotics, hygromycin A (HygA) and macrolides, which target peptidyl transferase center and peptide exit tunnel, respectively, can act cooperatively against susceptible and drug-resistant bacteria. Remarkably, HygA slows down macrolide dissociation from the ribosome by 60-fold and enhances the otherwise weak antimicrobial activity of the newest-generation macrolide drugs known as ketolides against macrolide-resistant bacteria. By determining a set of high-resolution X-ray crystal structures of drug-sensitive wild-type and macrolide-resistant Erm-methylated 70S ribosomes in complex with three HygA-macrolide pairs, we provide a structural rationale for the binding cooperativity of these drugs and also uncover the molecular mechanism of overcoming Erm-type resistance by macrolides acting together with hygromycin A. Altogether our structural, biochemical, and microbiological findings lay the foundation for the subsequent development of synergistic antibiotic tandems with improved bactericidal properties against drug-resistant pathogens, including those expressing erm genes.

Indexed as

KetolidesMacrolidesAnti-Bacterial AgentsBacteriaCinnamatesDrug Resistance, BacterialHygromycin BProtein Synthesis InhibitorsAnti-Bacterial AgentsCinnamateshygromycin AHygromycin BKetolidesMacrolidesProtein Synthesis Inhibitors

Identifiers

PMID37452045
PMCPMC10349075
OpenAlexW4384341748

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.