Evidence map›Paper›PMID 37452040›Full record

ArticleNature communications2023

Increased body mass index is linked to systemic inflammation through altered chromatin co-accessibility in human preadipocytes.

Kristina M Garske, Asha Kar, Caroline Comenho, Brunilda Balliu, David Z Pan, Yash V Bhagat, Gregory Rosenberg, Amogha Koka, Sankha Subhra Das, Zong Miao and 4 more

Open access · goldAbstract readTwin Study
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Kristina M GarskeDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-7228-8125
Asha KarDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.ORCID 0009-0000-1717-1744
Caroline ComenhoDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Brunilda BalliuDepartment of Computational Medicine, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0001-8953-804X
David Z PanDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Yash V BhagatDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-3437-1817
Gregory RosenbergDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-1297-1715
Amogha KokaDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Sankha Subhra DasDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Zong MiaoDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-6183-4565
Janet S SinsheimerDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Jaakko KaprioInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, 00014, Finland.ORCID 0000-0002-3716-2455
Kirsi H PietiläinenObesity Research Unit, Research Program for Clinical and Molecular Metabolism, Faculty of Medicine, University of Helsinki, Helsinki, 00014, Finland.ORCID 0000-0002-8522-1288
Päivi PajukantaDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA. ppajukanta@mednet.ucla.edu.ORCID 0000-0002-6423-8056
University of California, Los Angeles · USUniversity of Helsinki · FI

Funding

UCLA MSD ProgramR25GM055052 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BARBER, PAUL HENRY, HASSON, TAMA W. · 1996 to 2021
$9.2M
Methods for Genomic Analysis in Heterogeneous TissuesR01HG010505 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HALPERIN, ERAN · 2019 to 2022
$2.6M
Genetics of adipose cell-type expression and cardiometabolic traitsR01DK132775 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MOHLKE, KAREN L., PAJUKANTA, PAIVI · 2022 to 2025
$2.4M
Functional genetic variants for type 2 diabetesU01DK105561 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MOHLKE, KAREN L. · 2015 to 2019
$2.3M
Understanding the contribution of genotype-by-lifestyle interactions to cardiometabolic risk in individuals of east African ancestryF32ES034668 · NIEHS · PRINCETON UNIVERSITY · PI GARSKE, KRISTINA MARIE · 2022 to 2024
$213k
Integrating functional genomics in primary human adipocytes to investigate gene regulatory circuitry for obesogenic cardiovascular traitsF31HL142180 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GARSKE, KRISTINA MARIE · 2018 to 2020
$110k
Investigation of chromosomal interactions and obesogenic gene regulatory networks in adiposeF31DK118865 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PAN, DAVID ZHI-CHAO · 2018 to 2019
$68k
NHGRI NIH HHS R01 HG010505NHLBI NIH HHS F31 HL142180NIDDK NIH HHS F31 DK118865NIDDK NIH HHS R01 DK132775NIDDK NIH HHS U01 DK105561NIEHS NIH HHS F32 ES034668NIGMS NIH HHS R25 GM055052
6 · The paper itself

Abstract

Obesity-induced adipose tissue dysfunction can cause low-grade inflammation and downstream obesity comorbidities. Although preadipocytes may contribute to this pro-inflammatory environment, the underlying mechanisms are unclear. We used human primary preadipocytes from body mass index (BMI) -discordant monozygotic (MZ) twin pairs to generate epigenetic (ATAC-sequence) and transcriptomic (RNA-sequence) data for testing whether increased BMI alters the subnuclear compartmentalization of open chromatin in the twins' preadipocytes, causing downstream inflammation. Here we show that the co-accessibility of open chromatin, i.e. compartmentalization of chromatin activity, is altered in the higher vs lower BMI MZ siblings for a large subset ( ~ 88.5 Mb) of the active subnuclear compartments. Using the UK Biobank we show that variants within these regions contribute to systemic inflammation through interactions with BMI on C-reactive protein. In summary, open chromatin co-accessibility in human preadipocytes is disrupted among the higher BMI siblings, suggesting a mechanism how obesity may lead to inflammation via gene-environment interactions.

Indexed as

InflammationObesityBody Mass IndexChromatinHumansTwins, MonozygoticChromatin

Identifiers

PMID37452040
PMCPMC10349101
OpenAlexW4384296923

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.