Evidence map›Paper›PMID 37452018›Full record

ArticleNature communications2023

Lactate-dependent transcriptional regulation controls mammalian eye morphogenesis.

Nozomu Takata, Jason M Miska, Marc A Morgan, Priyam Patel, Leah K Billingham, Neha Joshi, Matthew J Schipma, Zachary J Dumar, Nikita R Joshi, Alexander V Misharin and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. DAPL1 is activated by Np63 and GRα and regulates lipid metabolism.Journal of molecular medicine (Berlin, Germany) · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Lactate and lactylation in cancer.Signal transduction and targeted therapy · 2025
    Review
  17. PKM2 controls cochlear development through lactate-dependent transcriptional regulation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Research Progress of Epigenetic Modifications in Myopia.International journal of medical sciences · 2025
    Review
  19. Exploring Histone Modifications in Inherited Retinal Disorders.Advances in experimental medicine and biology · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 2 countries.

Nozomu TakataCenter for Vascular and Developmental Biology, Feinberg Cardiovascular and Renal Research Institute, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.ORCID 0000-0003-0171-6994
Jason M Miska *Department of Neurological Surgery, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0001-9608-2810
Marc A Morgan *Simpson Querrey Institute for Epigenetics and Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0002-0141-6273
Priyam PatelCenter for Genetic Medicine, Northwestern University, Chicago, IL, 60611, USA.ORCID 0000-0002-9433-5017
Leah K BillinghamDepartment of Neurological Surgery, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.
Neha JoshiCenter for Genetic Medicine, Northwestern University, Chicago, IL, 60611, USA.
Matthew J SchipmaCenter for Genetic Medicine, Northwestern University, Chicago, IL, 60611, USA.
Zachary J DumarSimpson Querrey Institute for Epigenetics and Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.
Nikita R JoshiDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.
Alexander V MisharinDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0003-2879-3789
Ryan B EmbryCenter for Genetic Medicine, Northwestern University, Chicago, IL, 60611, USA.
Luciano FioreCenter for Vascular and Developmental Biology, Feinberg Cardiovascular and Renal Research Institute, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
Peng GaoRobert H. Lurie Cancer Center Metabolomics Core, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0002-9991-6064
Lauren P DieboldDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.
Gregory S McElroyDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0003-0376-5327
Ali ShilatifardSimpson Querrey Institute for Epigenetics and Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0002-7490-2854
Navdeep S ChandelDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0001-7208-3886
Guillermo OliverCenter for Vascular and Developmental Biology, Feinberg Cardiovascular and Renal Research Institute, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA. guillermo.oliver@northwestern.edu.ORCID 0000-0003-3984-7615
Northwestern University · US

Funding

Tissue resident macrophages regulate proteostasis in the aging lungP01AG049665 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GR Scott Budinger · 2015 to 2026
$26.9M
National Metabolomics Data Repository - nextgen Metabolomics WorkbenchU2CDK119886 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2018 to 2021
$12.7M
Biomedical Data Commons Workbench (BDCW)OT2OD030544 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2020 to 2024
$3.2M
Mitochondrial respiration as a regulator of lymphatic cell fate and therapeutic lymphangiogenesisR01HL162800 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI OLIVER, GUILLERMO C, SOSA-PINEDA, BEATRIZ · 2022 to 2025
$3.0M
Functional roles of lymphatics in organogenesis and tissue repairR01HL151388 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI OLIVER, GUILLERMO C · 2021 to 2024
$2.5M
Web Portal CoreU2CDK119889 · NIDDK · UNIVERSITY OF FLORIDA · PI CONLON, MICHAEL, GARRETT, TIMOTHY J · 2018 to 2021
$1.9M
NHLBI NIH HHS R01 HL151388NHLBI NIH HHS R01 HL162800NIA NIH HHS P01 AG049665NIDDK NIH HHS U2C DK119886NIDDK NIH HHS U2C DK119889NIH HHS OT2 OD030544
6 · The paper itself

Abstract

Mammalian retinal metabolism favors aerobic glycolysis. However, the role of glycolytic metabolism in retinal morphogenesis remains unknown. We report that aerobic glycolysis is necessary for the early stages of retinal development. Taking advantage of an unbiased approach that combines the use of eye organoids and single-cell RNA sequencing, we identify specific glucose transporters and glycolytic genes in retinal progenitors. Next, we determine that the optic vesicle territory of mouse embryos displays elevated levels of glycolytic activity. At the functional level, we show that removal of Glucose transporter 1 and Lactate dehydrogenase A gene activity from developing retinal progenitors arrests eye morphogenesis. Surprisingly, we uncover that lactate-mediated upregulation of key eye-field transcription factors is controlled by the epigenetic modification of histone H3 acetylation through histone deacetylase activity. Our results identify an unexpected bioenergetic independent role of lactate as a signaling molecule necessary for mammalian eye morphogenesis.

Indexed as

Lactic AcidRetinaAnimalsEnergy MetabolismEyeGene Expression RegulationGlycolysisMammalsMiceMorphogenesisLactic Acid

Identifiers

PMID37452018
PMCPMC10349100
OpenAlexW4384298715

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.