Evidence map›Paper›PMID 37450563›Full record

ArticleACS infectious diseases2023

Discovery of a New Antibiotic Demethoxytetronasin Using a Dual-Sided Agar Plate Assay (DAPA).

Jung-Ho Lee, Rui Ma, Linh Nguyen, Shahebraj Khan, Mallique Qader, Enock Mpofu, Gauri Shetye, Nyssa K Krull, Mario Augustinović, Sesselja Omarsdottir and 3 more

Abstract read
In one paragraph

Article in ACS infectious diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jung-Ho LeeDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.
Rui MaInstitute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States.
Linh NguyenDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.
Shahebraj KhanInstitute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States.
Mallique QaderInstitute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States.
Enock MpofuInstitute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States.
Gauri ShetyeInstitute for Tuberculosis Research, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States.
Nyssa K KrullDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.
Mario AugustinovićDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.
Sesselja OmarsdottirFaculty of Pharmaceutical Sciences, University of Iceland, Hagi, Hofsvallagata 53, Reykjavík IS-107, Iceland.
Sanghyun ChoDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.ORCID 0000-0003-0926-6246
Scott G FranzblauDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.ORCID 0000-0002-8698-0243
Brian T MurphyDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago,, 833 S. Wood Street, Chicago, Illinois 60612, United States.ORCID 0000-0002-1372-3887

Funding

MALDI-TOF MS/IDBac to discover antibiotics from the Great Lakes sponge microbiomeR01GM125943 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MURPHY, BRIAN THACHER, SANCHEZ, LAURA MARGARET · 2018 to 2021
$2.1M
Enhancing basic and translational TB research in northern VietnamD43TW010530 · FIC · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MURPHY, BRIAN THACHER, PHAM, CUONG VAN · 2017 to 2021
$1.1M
Identification of antimicrobial reagents against TB and ESKAPE pathogens from bacteria collected in VietnamR01AI160696 · NIAID · --INSTITUTE OF MARINE BIOCHEMISTRY · PI NGUYEN, LINH THUY, TRAN, TUAN ANH · 2021 to 2021
$130k
FIC NIH HHS D43 TW010530NIAID NIH HHS R01 AI160696NIGMS NIH HHS R01 GM125943
6 · The paper itself

Abstract

For over a century, researchers have cultured microorganisms together on solid support─typically agar─in order to observe growth inhibition via antibiotic production. These simple bioassays have been critical to both academic researchers that study antibiotic production in microorganisms and to the pharmaceutical industry's global effort to discover drugs. Despite the utility of agar assays to researchers around the globe, several limitations have prevented their widespread adoption in advanced high-throughput compound discovery and dereplication campaigns. To address a list of specific shortcomings, we developed the dual-sided agar plate assay (DAPA), which exists in a 96-well plate format, allows microorganisms to compete through opposing sides of a solid support in individual wells, is amenable to high-throughput screening and automation, is reusable, and is low-cost. Herein, we validate the use of DAPA as a tool for drug discovery and show its utility to discover new antibiotic natural products. From the screening of 217 bacterial isolates on multiple nutrient media against 3 pathogens, 55 hits were observed, 9 known antibiotics were dereplicated directly from agar plugs, and a new antibiotic, demethoxytetronasin (

Indexed as

Anti-Bacterial AgentsBiological ProductsAgarDrug DiscoveryHigh-Throughput Screening AssaysAgarAnti-Bacterial AgentsBiological Productsantibiotic bioassaydemethoxytetronasindual-sided agar plate assay (DAPA)Streptomyces sptetronasin

Identifiers

PMID37450563
PMCPMC10426401

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.