Evidence map›Paper›PMID 37450157›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Cataloguing Protein Complexes In Planta Using TurboID-Catalyzed Proximity Labeling.

Lore Gryffroy, Joren De Ryck, Veronique Jonckheere, Sofie Goormachtig, Alain Goossens, Petra Van Damme

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Exploring the potential role of fourFrontiers in plant science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Lore GryffroyDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Joren De RyckDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Veronique JonckheereiRIP Unit, Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
Sofie GoormachtigDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Alain GoossensDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Petra Van DammeiRIP Unit, Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium. petra.vandamme@ugent.be.
Ghent University · BEVIB-UGent Center for Plant Systems Biology · BEGhent University Hospital · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mapping protein-protein interactions is crucial to understand protein function. Recent advances in proximity-dependent biotinylation (BioID) coupled to mass spectrometry (MS) allow the characterization of protein complexes in diverse plant models. Here, we describe the use of BioID in hairy root cultures of tomato and provide detailed information on how to analyze the data obtained by MS.

Indexed as

Protein Interaction MappingProteinsBiotinylationCatalysisProteinsInteractomicsMass spectrometryProteinProtein interactionsProximity-dependent biotinylationSolanaceae hairy root culturesTurboID

Identifiers

PMID37450157
OpenAlexW4384346583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.