Evidence map›Paper›PMID 37443799›Full record

ArticleCells2023

Isotopic Tracing of Nucleotide Sugar Metabolism in Human Pluripotent Stem Cells.

Federica Conte, Marek J Noga, Monique van Scherpenzeel, Raisa Veizaj, Rik Scharn, Juda-El Sam, Chiara Palumbo, Frans C A van den Brandt, Christian Freund, Eduardo Soares and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cells, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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  3. Article
  4. Article
  5. Review
  6. Article
  7. Metabolomics andCommunications biology · 2024
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 2 countries.

Federica ConteDepartment of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.ORCID 0000-0003-1481-7401
Marek J NogaDepartment of Clinical Genetics, Maastricht University Medical Center, 6229 HX Maastricht, The Netherlands.ORCID 0000-0001-8352-611X
Monique van ScherpenzeelGlycoMScan B.V., 5349 AB Oss, The Netherlands.
Raisa VeizajDepartment of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.
Rik ScharnDepartment of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.ORCID 0009-0003-1785-2592
Juda-El SamDepartment of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.
Chiara PalumboDepartment of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.
Frans C A van den BrandtGlycoMScan B.V., 5349 AB Oss, The Netherlands.
Christian FreundhiPSC Hotel, LUMC, 2333 ZC Leiden, The Netherlands.
Eduardo SoaresDepartment of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, 6525 GA Nijmegen, The Netherlands.
Huiqing ZhouDepartment of Neurology, Amsterdam University Medical Centres, Location Academic Medical Center, Amsterdam Neuroscience, University of Amsterdam, 1098 XH Amsterdam, The Netherlands.
Dirk J LefeberDepartment of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.
Radboud University Nijmegen · NL

Funding

Metakids 2019-02b-UMNetherlands Organization for Scientific Research VICI 09150182010010Netherlands Organization for Scientific Research VIDI 40-00506-98-9001Prinses Breatrix Spierfonds W.OR15-17Stichting Stofwisselkracht 2019-2766-001
6 · The paper itself

Abstract

Metabolism not only produces energy necessary for the cell but is also a key regulator of several cellular functions, including pluripotency and self-renewal. Nucleotide sugars (NSs) are activated sugars that link glucose metabolism with cellular functions via protein N-glycosylation and O-GlcNAcylation. Thus, understanding how different metabolic pathways converge in the synthesis of NSs is critical to explore new opportunities for metabolic interference and modulation of stem cell functions. Tracer-based metabolomics is suited for this challenge, however chemically-defined, customizable media for stem cell culture in which nutrients can be replaced with isotopically labeled analogs are scarcely available. Here, we established a customizable flux-conditioned E8 (FC-E8) medium that enables stem cell culture with stable isotopes for metabolic tracing, and a dedicated liquid chromatography mass-spectrometry (LC-MS/MS) method targeting metabolic pathways converging in NS biosynthesis. By

Indexed as

Pluripotent Stem CellsTandem Mass SpectrometryChromatography, LiquidGlucoseHumansNucleotidesSugarsUridine DiphosphateGlucoseNucleotidesSugarsUridine Diphosphateglycosylationinduced pluripotent stem cellsmass spectrometry-based isotopic tracingnucleotide sugar metabolismO-GlcNAcylationPGM1 deficiency

Identifiers

PMID37443799
PMCPMC10340731
OpenAlexW4383104635

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.