Evidence map›Paper›PMID 37442527›Full record

ArticleVirus research2023

Complete genome sequence of an oryctes rhinoceros nudivirus isolated from Korean rhinoceros beetles (Trypoxylus dichotomus) in Korea.

Eunsun Kim, Ji-Young Kim, Wontae Kim, Seokhyun Lee, Kwan-Ho Park, June-Sun Yoon

Abstract read
In one paragraph

Article in Virus research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Eunsun KimIndustrial Insect and Sericulture Division, National Institute of Agricultural Sciences, RDA, Wanju 55365, Republic of Korea.
Ji-Young KimDepartment of Agricultural Convergence Technology, Jeonbuk National University, Jeonju 54596, Republic of Korea.
Wontae KimResearch Policy Planning Division, RDA, Jeonju, 54875, Republic of Korea.
Seokhyun LeeDepartment of Animal Biotechnology, Jeonbuk National University, Jeonju 54596, Republic of Korea.
Kwan-Ho ParkIndustrial Insect and Sericulture Division, National Institute of Agricultural Sciences, RDA, Wanju 55365, Republic of Korea.
June-Sun YoonDepartment of Agricultural Convergence Technology, Jeonbuk National University, Jeonju 54596, Republic of Korea. Electronic address: jsyoon@jbnu.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nudivirus-infected Korean rhinoceros beetles (Trypoxylus dichotomus) were first identified in 2015, and while a complete genome sequence of the virus has long been uploaded to the NCBI database, it has not been examined in detail. Here, we describe the genomic characteristics of Trypoxylus dichotomus nudivirus (TdNV), which represents a new Oryctes rhinoceros nudivirus (OrNV) strain, isolated from infected T. dichotomus in the Republic of Korea. We examined factors derived by the cross-species infection of OrNV from nucleotide levels to the whole genome level. Our genomic analysis study suggests that TdNV-Korea is highly conserved with other OrNVs in terms of genomic structures and genome size. Our investigation of the genomic structure revealed that TdNV-Korea has the least number of open reading frames (ORFs) of all available OrNV genomes; three hypothetical genes were notably absent only in TdNV-Korea. In addition, the genomic alteration of the nudivirus core genes discloses that various amino acid mutations caused by single-nucleotide polymorphism and short indels (insertion/deletion) were found in most of the nudivirus core genes of TdNV-Korea. Our findings provide a valuable resource for those seeking a greater understanding of cross-species nudivirus transmission and will certainly provide valuable insight for reconstruction and reinterpretation of future and previously identified OrNV strains.

Indexed as

ColeopteraNudiviridaeAnimalsPerissodactylaRepublic of KoreaGenome analysisOryctes rhinoceros nudivirus (OrNV)Trypoxylus dichotomus nudivirus (TdNV) genomeVirus transmission

Identifiers

PMID37442527
PMCPMC10485680

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.