Evidence map›Paper›PMID 37441076›Full record

ArticleFrontiers in immunology2023

Computational formulation of a multiepitope vaccine unveils an exceptional prophylactic candidate against Merkel cell polyomavirus.

Raihan Rahman Imon, Abdus Samad, Rahat Alam, Ahad Amer Alsaiari, Md Enamul Kabir Talukder, Mazen Almehmadi, Foysal Ahammad, Farhan Mohammad

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Raihan Rahman ImonLaboratory of Computational Biology, Biological Solution Centre (BioSol Centre), Jashore, Bangladesh.
Abdus SamadLaboratory of Computational Biology, Biological Solution Centre (BioSol Centre), Jashore, Bangladesh.
Rahat AlamLaboratory of Computational Biology, Biological Solution Centre (BioSol Centre), Jashore, Bangladesh.
Ahad Amer AlsaiariClinical Laboratories Science Department, College of Applied Medical Science, Taif University, Taif, Saudi Arabia.
Md Enamul Kabir TalukderLaboratory of Computational Biology, Biological Solution Centre (BioSol Centre), Jashore, Bangladesh.
Mazen AlmehmadiClinical Laboratories Science Department, College of Applied Medical Science, Taif University, Taif, Saudi Arabia.
Foysal AhammadLaboratory of Computational Biology, Biological Solution Centre (BioSol Centre), Jashore, Bangladesh.
Farhan MohammadDivision of Biological and Biomedical Sciences (BBS), College of Health and Life Sciences (CHLS), Hamad Bin Khalifa University (HBKU), Doha, Qatar.
Hamad bin Khalifa University · QATaif University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Merkel cell carcinoma (MCC) is a rare neuroendocrine skin malignancy caused by human Merkel cell polyomavirus (MCV), leading to the most aggressive skin cancer in humans. MCV has been identified in approximately 43%-100% of MCC cases, contributing to the highly aggressive nature of primary cutaneous carcinoma and leading to a notable mortality rate. Currently, no existing vaccines or drug candidates have shown efficacy in addressing the ailment caused by this specific pathogen. Therefore, this study aimed to design a novel multiepitope vaccine candidate against the virus using integrated immunoinformatics and vaccinomics approaches. Initially, the highest antigenic, immunogenic, and non-allergenic epitopes of cytotoxic T lymphocytes, helper T lymphocytes, and linear B lymphocytes corresponding to the virus whole protein sequences were identified and retrieved for vaccine construction. Subsequently, the selected epitopes were linked with appropriate linkers and added an adjuvant in front of the construct to enhance the immunogenicity of the vaccine candidates. Additionally, molecular docking and dynamics simulations identified strong and stable binding interactions between vaccine candidates and human Toll-like receptor 4. Furthermore, computer-aided immune simulation found the real-life-like immune response of vaccine candidates upon administration to the human body. Finally, codon optimization was conducted on the vaccine candidates to facilitate the

Indexed as

Carcinoma, Merkel CellMerkel cell polyomavirusSkin NeoplasmsVaccinesEpitopes, B-LymphocyteHumansMolecular Docking SimulationViral ProteinsEpitopes, B-LymphocyteVaccinesViral ProteinsimmunoinformaticsMerkel cell carcinomas (MCC)Merkel cell polyomavirus (MCV)molecular dockingmolecular dynamics simulation (MD)multiepitope vaccinevaccine design

Identifiers

PMID37441076
PMCPMC10333698
OpenAlexW4382242264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.