Evidence map›Paper›PMID 37440478›Full record

ArticleGenetics2023

Identification and characterization of protein interactions with the major Niemann-Pick type C disease protein in yeast reveals pathways of therapeutic potential.

Natalie Hammond, Jamie Snider, Igor Stagljar, Kevin Mitchell, Kirill Lagutin, Matthew Jessulat, Mohan Babu, Paul H Teesdale-Spittle, Jeffrey P Sheridan, Stephen L Sturley and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Natalie HammondSchool of Biological Sciences, Victoria University of Wellington, Wellington 6012, New Zealand.
Jamie SniderDonnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Igor StagljarDonnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Kevin MitchellCallaghan Innovation, Lower Hutt 5040, New Zealand.
Kirill LagutinCallaghan Innovation, Lower Hutt 5040, New Zealand.
Matthew JessulatDepartment of Biochemistry, Research and Innovation Centre, University of Regina, Regina, Saskatchewan S4S 0A2, Canada.
Mohan BabuDepartment of Biochemistry, Research and Innovation Centre, University of Regina, Regina, Saskatchewan S4S 0A2, Canada.
Paul H Teesdale-SpittleSchool of Biological Sciences, Victoria University of Wellington, Wellington 6012, New Zealand.
Jeffrey P SheridanSchool of Biological Sciences, Victoria University of Wellington, Wellington 6012, New Zealand.
Stephen L SturleyDepartment of Biology, Barnard College-Columbia University, New York, NY 10027, USA.
Andrew B MunkacsiSchool of Biological Sciences, Victoria University of Wellington, Wellington 6012, New Zealand.
Victoria University of Wellington · NZCallaghan Innovation · NZUniversity of Regina · CABarnard College · USMediterranean Institute for Life Sciences · HRUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Niemann-Pick type C (NP-C) disease is a rare lysosomal storage disease caused by mutations in NPC1 (95% cases) or NPC2 (5% cases). These proteins function together in cholesterol egress from the lysosome, whereby upon mutation, cholesterol and other lipids accumulate causing major pathologies. However, it is not fully understood how cholesterol is transported from NPC1 residing at the lysosomal membrane to the endoplasmic reticulum (ER) and plasma membrane. The yeast ortholog of NPC1, Niemann-Pick type C-related protein-1 (Ncr1), functions similarly to NPC1; when transfected into a mammalian cell lacking NPC1, Ncr1 rescues the diagnostic hallmarks of cholesterol and sphingolipid accumulation. Here, we aimed to identify and characterize protein-protein interactions (PPIs) with the yeast Ncr1 protein. A genome-wide split-ubiquitin membrane yeast two-hybrid (MYTH) protein interaction screen identified 11 ER membrane-localized, full-length proteins interacting with Ncr1 at the lysosomal/vacuolar membrane. These highlight the importance of ER-vacuole membrane interface and include PPIs with the Cyb5/Cbr1 electron transfer system, the ceramide synthase complex, and the Sec61/Sbh1 protein translocation complex. These PPIs were not detected in a sterol auxotrophy condition and thus depend on normal sterol metabolism. To provide biological context for the Ncr1-Cyb5 PPI, a yeast strain lacking this PPI (via gene deletions) exhibited altered levels of sterols and sphingolipids including increased levels of glucosylceramide that mimic NP-C disease. Overall, the results herein provide new physical and genetic interaction models to further use the yeast model of NP-C disease to better understand human NP-C disease.

Indexed as

Niemann-Pick Disease, Type CSaccharomyces cerevisiaeAnimalsCholesterolHumansMammalsNatural Cytotoxicity Triggering Receptor 1ProteinsSterolsCholesterolNatural Cytotoxicity Triggering Receptor 1ProteinsSterolslipid transportlysosomal storage diseaseneurodegenerative diseaserare diseasesphingolipidsterolyeast model

Identifiers

PMID37440478
PMCPMC10471228
OpenAlexW4384132310

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.