Evidence map›Paper›PMID 37439220›Full record

ArticlePharmaceutical biology2023

Transcriptomic analysis reveals the regulatory mechanism underlying the indirubin-mediated amelioration of dextran sulfate sodium-induced colitis in mice.

Zhe Liu, Jin-Ru Zhang, Yong-Xiang Huang, Xue-Ying Li, Hai-Peng Zhu, Rui-Yi Yang, Song Chen

Open access · goldAbstract read
In one paragraph

Article in Pharmaceutical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  3. Journal of pharmacopuncture · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhe LiuScience and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China.ORCID 0000-0002-0168-6572
Jin-Ru ZhangScience and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China.
Yong-Xiang HuangScience and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China.
Xue-Ying LiScience and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China.
Hai-Peng ZhuDongguan Ninth People's hospital, Dongguan, P.R. China.
Rui-Yi YangScience and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China.
Song ChenScience and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China.ORCID 0000-0003-2521-717X
Guangzhou University of Chinese Medicine · CNDongguan People’s Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextAryl hydrocarbon receptor (AhR) agonists are potential therapeutic agents for ulcerative colitis (UC). Indirubin (IDR), which is a natural AhR ligand approved for leukemia treatment, ameliorates dextran sulfate sodium (DSS)-induced colitis in mice. However, the therapeutic mechanisms of IDR are unknown, limiting its application.

objectiveThis study explores the therapeutic mechanisms of IDR in DSS-induced colitis using transcriptomic analysis. MATERIALS AND

methodsMale BALB/c mice were categorized to six groups: normal, DSS model (2% DSS), IDR treatment (10, 20 and 40 mg/kg), and sulfasalazine (520 mg/kg) groups. The drugs were intragastrically administered for 7 consecutive days. The disease activity index (DAI) was recorded. After euthanasia, the colon length was measured, and histopathological examination, immunohistochemistry staining using F4/80, and colonic transcriptomic analysis were conducted. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) and western blotting (WB) were conducted to verify our findings.

resultsCompared with DSS, IDR treatment decreased the DAI score by 64.9% and increased colon length by 26.2%. Moreover, it alleviated mucosal injury and reduced macrophage infiltration. Transcriptomic analysis identified several downregulated genes ( DISCUSSION AND

conclusionApart from the well-documented NF-κB signalling pathway, IL-17A, and NLRP3-IL-1β, the suppression of haemoglobin-induced lipid peroxidation could be a previously unknown mechanism of IDR. Our study can help improve its application for UC treatment.

Indexed as

ColitisColitis, UlcerativeAnimalsDextran SulfateIndolesMaleMiceNF-kappa BNLR Family, Pyrin Domain-Containing 3 ProteinTranscriptomeDextran SulfateindirubinIndolesNF-kappa BNLR Family, Pyrin Domain-Containing 3 ProteinAryl hydrocarbon receptor (AhR)hemoglobin (Hb)interleukin-17A (IL-17A)NLR family pyrin domain containing 3 (NLRP3)nuclear factor-kappa B (NF-κB)

Identifiers

PMID37439220
PMCPMC10348027
OpenAlexW4384120425

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.