Evidence map›Paper›PMID 37438657›Full record

ArticleGenes & genomics2023

Genome-wide identification and analysis of MIKC-type MADS-box genes expression in Chimonanthus salicifolius.

Fang-Fang Gui, Ge-Ge Jiang, Bin Dong, Shi-Wei Zhong, Zheng Xiao, Qiu Fang, Yi-Guang Wang, Li-Yuan Yang, Hongbo Zhao

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Article in Genes & genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Fang-Fang Gui *School of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Ge-Ge Jiang *School of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Bin DongSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Shi-Wei ZhongSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Zheng XiaoSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Qiu FangSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Yi-Guang WangSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China.
Li-Yuan YangSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China. lyyang@zafu.edu.cn.ORCID 0000-0001-7327-7527
Hongbo ZhaoSchool of Landscape Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China. zhaohb@zafu.edu.cn.
Zhejiang A & F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMIKC type MADS-box transcription factors are one of the largest gene families and play a pivotal role in flowering time and flower development. Chimonanthus salicifolius belongs to the family Calycanthaceae and has a unique flowering time and flowering morphology compared to other Chimonanthus species, but the research on MIKC type MADS-box gene family of C. salicifolius has not been reported.

objectiveIdentification, comprehensive bioinformatic analysis, the expression pattern of MIKC-type MADS-box gene family from different tissues of C. salicifolius.

methodsGenome-wide investigation and expression pattern under different tissues of the MIKC-type MADS-box gene family in C. salicifolius, and their phylogenetic relationships, evolutionary characteristics, gene structure, motif distribution, promoter cis-acting element were performed.

resultsA total of 29 MIKC-type MADS-box genes were identified from the whole genome sequencing. Interspecies synteny analysis revealed more significant collinearity between C. salicifolius and the magnoliids species compared to eudicots and monocots. MIKC-type MADS-box genes from the same subfamily share similar distribution patterns, gene structure, and expression patterns. Compared with Arabidopsis thaliana, Nymphaea colorata, and Chimonanthus praecox, the FLC genes were absent in C. salicifolius, while the AGL6 subfamily was expanded in C. salicifolius. The selectively expanded promoter (AGL6) and lack of repressor (FLC) genes may explain the earlier flowering in C. salicifolius. The loss of the AP3 homologous gene in C. salicifolius is probably the primary cause of the morphological distinction between C. salicifolius and C. praecox. The csAGL6a gene is specifically expressed in the flowering process and indicates the potential function of promoting flowering.

conclusionThis study offers a genome-wide identification and expression profiling of the MIKC-types MADS-box genes in the C. salicifolius, and establishes the foundation for screening flowering development genes and understanding the potential function of the MIKC-types MADS-box genes in the C. salicifolius.

Indexed as

Genome, PlantMADS Domain ProteinsGene ExpressionPhylogenyTranscription FactorsMADS Domain ProteinsTranscription FactorsFlower developmentFlowering timeGene expression patternsGene family identification

Identifiers

PMID37438657
OpenAlexW4384024689

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.