Evidence map›Paper›PMID 37438412›Full record

ArticleScientific reports2023

Antigen test swabs are comparable to nasopharyngeal swabs for sequencing of SARS-CoV-2.

Sayf Al-Deen Hassouneh, Alexa Trujillo, Sobur Ali, Eleonora Cella, Catherine Johnston, Katherine C DeRuff, Pardis C Sabeti, Taj Azarian

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 antigen self tests.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sayf Al-Deen HassounehBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA.
Alexa TrujilloBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA.
Sobur AliBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA.
Eleonora CellaBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA.
Catherine JohnstonBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA.
Katherine C DeRuffBroad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Pardis C SabetiBroad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Taj AzarianBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA. taj.azarian@ucf.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral genomic surveillance has been integral in the global response to the SARS-CoV-2 pandemic. Surveillance efforts rely on the availability of representative clinical specimens from ongoing testing activities. However, testing practices have recently shifted due to the widespread availability and use of rapid antigen tests, which could lead to gaps in future monitoring efforts. As such, genomic surveillance strategies must adapt to include laboratory workflows that are robust to sample type. To that end, we compare the results of RT-qPCR and viral genome sequencing using samples from positive BinaxNOW COVID-19 Antigen Card swabs (N = 555) to those obtained from nasopharyngeal (NP) swabs used for nucleic acid amplification testing (N = 135). We show that swabs obtained from antigen cards are comparable in performance to samples from NP swabs, providing a viable alternative and allowing for the potential expansion of viral genomic surveillance to outpatient clinic as well as other settings where rapid antigen tests are often used.

Indexed as

CardiologyCOVID-19Ambulatory Care FacilitiesHumansNasopharynxSARS-CoV-2

Identifiers

PMID37438412
PMCPMC10338537

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.