ArticleScientific data2023
A haplotype-resolved genome assembly of Rhododendron vialii based on PacBio HiFi reads and Hi-C data.
Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Pangenome analysis reveals the genetic mechanism underlying high-altitude adaptation in Qinghai-Xizang (Tibet) Plateau Rhododendron.Journal of integrative plant biology · 2026Article
- Chromosome-level genome and population genomics reveal demographic history, incomplete divergence and coastal adaptation ofPlant diversity · 2026Article
- Chromosome-Level Genome Announcement of the MonokaryoticJournal of fungi (Basel, Switzerland) · 2025Article
- Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genusPlant diversity · 2025Article
- The haplotype-resolved assembly of COL40 a cassava (Manihot esculenta) line with broad-spectrum resistance against viruses causing Cassava brown streak disease unveils a region of highly repeated elements on chromosome 12.G3 (Bethesda, Md.) · 2025Article
- A haplotype-resolved genome assembly and gene expression map of Cushion willow.Scientific data · 2025Article
- High-Quality Genome Assembly and Transcriptome ofPlants (Basel, Switzerland) · 2025Article
- Conservation genomics of a threatened subtropical Rhododendron species highlights the distinct conservation actions required in marginal and admixed populations.The Plant journal : for cell and molecular biology · 2025Article
- Article
- A Segregating Structural Variant Defines Novel Venom Phenotypes in the Eastern Diamondback Rattlesnake.Molecular biology and evolution · 2025Article
- Deciphering the complex organelle genomes of two Rhododendron species and insights into adaptive evolution patterns in high-altitude.BMC plant biology · 2024Article
- Chromosome-level genome assembly of Cnidium monnieri, a highly demanded traditional Chinese medicine.Scientific data · 2024Article
- A fully haplotype-resolved and nearly gap-free genome assembly of wheat stripe rust fungus.Scientific data · 2024Article
- Beyond NGS data sharing for plant ecological resilience and improvement of agronomic traits.Scientific data · 2024Article
- Chromosome-level genome assembly ofFrontiers in plant science · 2024Article
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Authors and funding
4 authors.
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Abstract
Rhododendron vialii (subgen. Azaleastrum) is an evergreen shrub with high ornamental value. This species has been listed as a plant species with extremely small populations (PSESP) for urgent protection by China's Yunnan provincial government in 2021, due to anthropogenic habitat fragmentation. However, limited genomic resources hinder scientifically understanding of genetic threats that the species is currently facing. In this study, we assembled a high-quality haplotype-resolved genome of R. vialii based on PacBio HiFi long reads and Hi-C reads. The assembly contains two haploid genomes with sizes 532.73 Mb and 521.98 Mb, with contig N50 length of 35.67 Mb and 34.70 Mb, respectively. About 99.92% of the assembled sequences could be anchored to 26 pseudochromosomes, and 14 gapless assembled chromosomes were included in this assembly. Additionally, 60,926 protein-coding genes were identified, of which 93.82% were functionally annotated. This is the first reported genome of R. vialii, and hopefully it will lay the foundations for further research into the conservation genomics and horticultural domestication of this ornamentally important species.
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